All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 721–744 of 943 models
ProTrek
2102447Tri-modal protein language model aligning sequence, structure, and text in one embedding space for natural-language search over billions of proteins.
Protein66OpennessMULAN
25—2Multimodal protein language model extending ESM-2 and SaProt with a Structure Adapter over residue torsion angles for protein function prediction.
Protein83OpennessLaBraM
64521—EEG foundation model that learns transferable brain-signal representations with a vector-quantized tokenizer and masked transformer pretraining.
Biosignals72OpennessSleepFM
174——Multi-modal foundation model for sleep analysis, learning joint representations across brain, cardiac, and respiratory polysomnography signals.
Biosignals76OpennessECG foundation model that learns 12-lead waveform representations by contrastively aligning each recording with machine-generated cardiological text.
Biosignals63OpennessBrainMorph
57——Keypoint-based foundation model for brain MRI registration, pretrained on over 100,000 3D volumes for rigid, affine, and deformable alignment.
Imaging85OpennessProv-GigaPath
624—120KWhole-slide histopathology foundation model pretrained on 1.3 billion image tiles from 171,189 clinical slides spanning 31 tissue types.
Pathology58OpennessMammo-CLIP
97—48Vision-language foundation model pre-trained on screening mammogram-report pairs to improve data efficiency and robustness in breast cancer detection.
ImagingPathology27OpennessEyeFound
—43—The Hong Kong Polytechnic University +3 othersMay 18, 2024disease_diagnosisfoundation_modelmasked_autoencoder+7Ophthalmic imaging foundation model pretrained on 2.78M images across 11 modalities for diagnosis, prognosis, and visual question answering.
Imaging4OpennessCellSeg3D
1221—Self-supervised 3D cell segmentation for fluorescence microscopy, pairing WNet3D with Swin-UNetR to segment volumes without annotated training data.
Imaging89OpennessMoME
318—Universal brain lesion segmentation for multi-modal brain MRI, using a Mixture of Modality Experts to span diverse modalities and lesion types.
Imaging79OpennessLOBSTER
1651—Efficient protein language model library from Prescient Design enabling high-quality sequence representations and fitness prediction in 24 GPU hours.
Protein69OpennessM4oE
5566—Hong Kong Baptist University +1 otherMay 15, 2024foundation_modelmedical_imagingmixture_of_experts+3Mixture-of-Experts foundation model for medical image segmentation that generalizes across imaging modalities and clinical centers.
Imaging28OpennessOpenFold
3.4K435—Trainable, open-source reimplementation of AlphaFold2 for protein structure prediction that matches its accuracy and runs 3-5x faster.
Protein89OpennessDistributional Graphormer
2.5K156—Deep learning framework predicting equilibrium distributions of molecular systems, enabling efficient ensemble generation and conformation sampling.
Protein46OpennessAlphaFold 3
8.3K12.3K—Diffusion-based structure prediction model for biomolecular complexes, spanning proteins with DNA, RNA, small molecules, ions, and modified residues.
Protein28OpennessDiscrete generative model for antibody protein sequences combining MCMC walks on a smoothed energy landscape with one-step denoising jumps.
Protein60OpennessEchoCLIP
51216—CLIP-style vision-language model for echocardiography, pretrained on echo videos and cardiologist reports for zero-shot cardiac interpretation.
Imaging32OpennessMed-Gemini
———Family of medical multimodal models built on Gemini, adding uncertainty-guided web search, custom modality encoders, and long-context EHR reasoning.
Language modelImaging8OpennessPuffin
106——Interpretable model of human transcription initiation that decomposes promoter activity into a minimal set of sequence rules at base-pair resolution.
DNA & Gene23OpennessMedDr
983659Hong Kong University of Science and TechnologyApril 23, 2024foundation_modelhistologyinstruction_tuning+7Generalist medical vision-language foundation model with 40B parameters, spanning radiology, pathology, dermatology, retinography, and endoscopy.
ImagingLanguage model69Openness