All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 721744 of 943 models

  • ProTrek

    2102447
    Westlake UniversityJune 1, 2024contrastive_learningfoundation_modelmultimodal+1

    Tri-modal protein language model aligning sequence, structure, and text in one embedding space for natural-language search over billions of proteins.

    Protein
    66Openness
  • MULAN

    252
    Skolkovo Institute of Science and TechnologyMay 30, 2024fine_tunedmultimodalproperty_prediction+4

    Multimodal protein language model extending ESM-2 and SaProt with a Structure Adapter over residue torsion angles for protein function prediction.

    Protein
    83Openness
  • LaBraM

    64521
    Shanghai Jiao Tong UniversityMay 29, 2024abnormal_detectionbrain_computer_interfaceeeg+6

    EEG foundation model that learns transferable brain-signal representations with a vector-quantized tokenizer and masked transformer pretraining.

    Biosignals
    72Openness
  • SleepFM

    174
    Stanford UniversityMay 28, 2024cnncontrastive_learningcross_modal_retrieval+3

    Multi-modal foundation model for sleep analysis, learning joint representations across brain, cardiac, and respiratory polysomnography signals.

    Biosignals
    76Openness
  • Rice UniversityMay 26, 2024arrhythmia_detectioncontrastive_learningconvnext+6

    ECG foundation model that learns 12-lead waveform representations by contrastively aligning each recording with machine-generated cardiological text.

    Biosignals
    63Openness
  • BrainMorph

    57
    Cornell University +3 othersMay 22, 2024brain_mricnnfoundation_model+3

    Keypoint-based foundation model for brain MRI registration, pretrained on over 100,000 3D volumes for rigid, affine, and deformable alignment.

    Imaging
    85Openness
  • Prov-GigaPath

    624120K
    Microsoft ResearchMay 22, 2024cancerfoundation_modelhistology+3

    Whole-slide histopathology foundation model pretrained on 1.3 billion image tiles from 171,189 clinical slides spanning 31 tissue types.

    Pathology
    58Openness
  • Mammo-CLIP

    9748
    Boston University +1 otherMay 20, 2024bertbreast_cancercancer_detection+8

    Vision-language foundation model pre-trained on screening mammogram-report pairs to improve data efficiency and robustness in breast cancer detection.

    ImagingPathology
    27Openness
  • EyeFound

    43
    The Hong Kong Polytechnic University +3 othersMay 18, 2024disease_diagnosisfoundation_modelmasked_autoencoder+7

    Ophthalmic imaging foundation model pretrained on 2.78M images across 11 modalities for diagnosis, prognosis, and visual question answering.

    Imaging
    4Openness
  • CellSeg3D

    1221
    Mathis LabMay 17, 20243d_imagingmicroscopysegmentation+2

    Self-supervised 3D cell segmentation for fluorescence microscopy, pairing WNet3D with Swin-UNetR to segment volumes without annotated training data.

    Imaging
    89Openness
  • MoME

    318
    Beijing Institute of Technology +3 othersMay 16, 2024brain_mricnncurriculum_learning+7

    Universal brain lesion segmentation for multi-modal brain MRI, using a Mixture of Modality Experts to span diverse modalities and lesion types.

    Imaging
    79Openness
  • LOBSTER

    1651
    Prescient Design +1 otherMay 15, 2024fitness_predictionfoundation_modellanguage_model+5

    Efficient protein language model library from Prescient Design enabling high-quality sequence representations and fitness prediction in 24 GPU hours.

    Protein
    69Openness
  • M4oE

    5566
    Hong Kong Baptist University +1 otherMay 15, 2024foundation_modelmedical_imagingmixture_of_experts+3

    Mixture-of-Experts foundation model for medical image segmentation that generalizes across imaging modalities and clinical centers.

    Imaging
    28Openness
  • OpenFold

    3.4K435
    AqlaboratoryMay 14, 2024foundation_modelstructure_prediction

    Trainable, open-source reimplementation of AlphaFold2 for protein structure prediction that matches its accuracy and runs 3-5x faster.

    Protein
    89Openness
  • Microsoft ResearchMay 13, 2024cryo_emdiffusiondrug_discovery+8

    Deep learning framework predicting equilibrium distributions of molecular systems, enabling efficient ensemble generation and conformation sampling.

    Protein
    46Openness
  • PLUTO

    2
    PathAIMay 13, 2024digital_pathologyfoundation_modelhistology+6

    Compact 22M-parameter ViT-S pathology foundation model pre-trained on 195M tiles, spanning subcellular segmentation to slide-level prediction.

    Pathology
    6Openness
  • AlphaFold 3

    8.3K12.3K
    Google DeepMindMay 8, 2024multimodalprotein_designstructure_prediction

    Diffusion-based structure prediction model for biomolecular complexes, spanning proteins with DNA, RNA, small molecules, ions, and modified residues.

    Protein
    28Openness
  • Prescient Design +1 otherMay 7, 2024antibodyantibody_designde_novo_design+4

    Discrete generative model for antibody protein sequences combining MCMC walks on a smoothed energy landscape with one-step denoising jumps.

    Protein
    60Openness
  • EchoCLIP

    51216
    Cedars-Sinai Medical Center +2 othersMay 6, 2024cardiac_ultrasoundcontrastive_learningconvnext+7

    CLIP-style vision-language model for echocardiography, pretrained on echo videos and cardiologist reports for zero-shot cardiac interpretation.

    Imaging
    32Openness
  • CellPLM

    10495
    OmicsMLMay 1, 2024cell_biologyfoundation_modellanguage_model+1

    Single-cell foundation model that treats cells as tokens and tissues as sentences, encoding cell-cell relationships across 85M parameters.

    Single-cell
    50Openness
  • ChatNT

    897537
    InstaDeep +1 otherApril 30, 2024gene_expressiongenomicsinstruction_tuning+3

    Conversational agent that answers plain-language questions about DNA, RNA, and protein sequences by coupling a genomics encoder to a language model.

    DNA & GeneLanguage model
    32Openness
  • Med-Gemini

    Google Research +1 otherApril 29, 2024clinical_reasoningelectronic_health_recordsfine_tuning+9

    Family of medical multimodal models built on Gemini, adding uncertainty-guided web search, custom modality encoders, and long-context EHR reasoning.

    Language modelImaging
    8Openness
  • Puffin

    106
    UT Southwestern Medical CenterApril 26, 2024chromatincnngene_expression+3

    Interpretable model of human transcription initiation that decomposes promoter activity into a minimal set of sequence rules at base-pair resolution.

    DNA & Gene
    23Openness
  • MedDr

    983659
    Hong Kong University of Science and TechnologyApril 23, 2024foundation_modelhistologyinstruction_tuning+7

    Generalist medical vision-language foundation model with 40B parameters, spanning radiology, pathology, dermatology, retinography, and endoscopy.

    ImagingLanguage model
    69Openness