Academic

University of Florida

A public land-grant research university that has made AI a campus-wide commitment, spanning medicine, drug discovery, and agricultural science.

Location: Gainesville, FL
Website
8 models(5 Protein, 3 Small molecule, 2 DNA & Gene, 1 Imaging)

Models (8)

Pep2Mol

University of Florida

Released June 29, 2026

Diffusion model for 3D small-molecule design against protein-protein interaction sites, guided by the natural binding peptide or protein partner.

Small moleculeProtein

DamageFormer

University of Florida

Released May 18, 2026

1

Multimodal framework that detects and localizes DNA lesions from native nanopore signal, built on the damage-aware LesionBERT foundation model.

DNA & Gene

MuseDrift

University of Florida / University of California, Irvine

Released May 12, 2026

Conditional discrete diffusion model for protein variant generation, with a calibrated identity dial controlling drift from a wild-type sequence.

Protein

BacPT

University of Florida

Released March 7, 2026

1

Bacterial proteome foundation model that learns contextualized gene and whole-genome representations from tens of thousands of complete genomes.

Protein

vir2vec

University of Florida

Released December 12, 2025

573683

Pan-viral genomic language model producing fixed genome-level embeddings of viral DNA and RNA, reused across classification tasks without retraining.

DNA & Gene

Apo2Mol

University of Florida

Released November 18, 2025

37

Diffusion model for structure-based drug design that jointly generates 3D ligands and holo pocket conformations from an apo protein structure.

Small moleculeProtein

GatorAffinity

University of Florida

Released October 1, 2025

135

Geometric deep learning scoring function for protein-ligand binding affinity, pretrained on synthetic complexes and fine-tuned on PDBbind structures.

ProteinSmall molecule

BrainSegFounder

University of Florida / NVIDIA

Released June 14, 2024

7515

3D vision-transformer foundation model for multimodal neuroimage segmentation, pretrained self-supervised on brain MRI from 41,400 participants.

Imaging