All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 745–768 of 943 models
OpenCRISPR-1
1.2K46—AI-designed CRISPR-Cas9 gene editor generated by protein language models trained on 1.2 million CRISPR operons and shown to edit the human genome.
Protein16OpennessNicheformer
1661421.4KTransformer foundation model pretrained on 110M single-cell and spatial transcriptomics profiles, transferring spatial context to dissociated cells.
Single-cell87OpennessLaMIM
1921—West China Hospital of Sichuan University +1 otherApril 17, 2024autoencoderbrain_mrifoundation_model+6Brain MRI foundation model pretrained with masked image modeling on roughly 57,000 multi-contrast head scans for brain tumor diagnosis.
Imaging15OpennessMed-MoE
158549—Lightweight mixture-of-experts medical vision-language model routing visual question answering and image classification to domain-specific experts.
ImagingLanguage modelPathology81OpennessUniFMIR
7079—Swin transformer foundation model for fluorescence microscopy image restoration, unifying denoising, super-resolution, and volumetric reconstruction.
Imaging83OpennessgLM
9193—Genomic language model trained on metagenomic scaffolds that learns protein co-regulation and function by modeling gene context and operon structure.
DNA & Gene30Openness5' UTR-LM
9412294Transformer language model for 5' UTR sequences that predicts mRNA translation efficiency, ribosome loading, and protein expression levels.
RNA60OpennessM3D
45138860Multimodal large language model for 3D medical imaging that handles report generation, visual question answering, and segmentation on CT volumes.
ImagingLanguage model77OpennessPLMSearch
80——Protein language model-based sequence search that detects remote homologs with threefold higher sensitivity than MMseqs2 at comparable speed.
Protein90OpennessUNI
7591.6K59.6KComputational pathology foundation model (ViT-L/16, DINOv2) pretrained on over 100 million H&E tiles from more than 100,000 whole-slide images.
Pathology46OpennessCONCH
5181K77.1KHistopathology vision-language foundation model pretrained on 1.17 million image-caption pairs with contrastive and captioning objectives.
Imaging44OpennessSSL-Wearables (HARNet)
161100—Self-supervised CNN pretrained on 700,000 person-days of UK Biobank accelerometer data for human activity recognition across devices and cohorts.
Biosignals28OpennessERNIE-RNA
44411.6KRNA language model that builds base-pairing constraints into self-attention, pretrained on 20.4 million sequences for structure and function tasks.
RNA46OpennessSelf-supervised 3D CT foundation model that extracts general-purpose tumor representations for cancer imaging biomarker discovery and prognosis.
Imaging92OpennessuniGradICON
2274—Foundation model for medical image registration that aligns CT and MRI across anatomies and modalities without per-pair optimization or retraining.
Imaging65OpennessRoseTTAFold All-Atom
812924—Deep network that predicts structures of full biological assemblies: proteins, nucleic acids, small molecules, metals, and covalent modifications.
Protein54OpennessCaduceus
2492212.6KBidirectional, reverse-complement equivariant DNA language models built on Mamba state space models for long-range variant effect prediction.
DNA & Gene86OpennessBrainMass
2557—Self-supervised foundation model for functional brain network analysis from resting-state fMRI, pretrained across 30 datasets for disorder diagnosis.
Biosignals18OpennessVoCo
22958—Hong Kong University of Science and TechnologyFebruary 27, 2024contrastive_learningctfoundation_model+5Self-supervised pretraining framework for 3D medical image encoders that learns anatomy by predicting where a sub-volume sits within a CT scan.
Imaging69OpennessProLLaMA
20794185Protein large language model adapted from LLaMA-2 that unifies sequence generation and superfamily classification in one 7B-parameter framework.
Protein95OpennessRibonanzaNet
1——RNA foundation model trained on chemical-mapping data from millions of sequences, predicting reactivity, secondary structure, and degradation.
RNA74OpennessscGPT
1.6K——Generative pretrained transformer trained on 33 million human cells for single-cell annotation, batch correction, and perturbation prediction.
Single-cell82Openness