All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 745768 of 943 models

  • OpenCRISPR-1

    1.2K46
    ProfluentApril 22, 2024de_novo_designdnafoundation_model+5

    AI-designed CRISPR-Cas9 gene editor generated by protein language models trained on 1.2 million CRISPR operons and shown to edit the human genome.

    Protein
    16Openness
  • Nicheformer

    1661421.4K
    Helmholtz Munich +1 otherApril 17, 2024foundation_modelspatial_transcriptomicstranscriptomics+1

    Transformer foundation model pretrained on 110M single-cell and spatial transcriptomics profiles, transferring spatial context to dissociated cells.

    Single-cell
    87Openness
  • LaMIM

    1921
    West China Hospital of Sichuan University +1 otherApril 17, 2024autoencoderbrain_mrifoundation_model+6

    Brain MRI foundation model pretrained with masked image modeling on roughly 57,000 multi-contrast head scans for brain tumor diagnosis.

    Imaging
    15Openness
  • Med-MoE

    158549
    Zhejiang University +2 othersApril 16, 2024histologyimage_classificationinstruction_tuning+5

    Lightweight mixture-of-experts medical vision-language model routing visual question answering and image classification to domain-specific experts.

    ImagingLanguage modelPathology
    81Openness
  • UniFMIR

    7079
    Fudan UniversityApril 12, 2024denoisingfluorescence_microscopyfoundation_model+2

    Swin transformer foundation model for fluorescence microscopy image restoration, unifying denoising, super-resolution, and volumetric reconstruction.

    Imaging
    83Openness
  • gLM

    9193
    Harvard University +1 otherApril 3, 2024foundation_modelgenomicsmetagenomics+2

    Genomic language model trained on metagenomic scaffolds that learns protein co-regulation and function by modeling gene context and operon structure.

    DNA & Gene
    30Openness
  • 5' UTR-LM

    9412294
    Princeton UniversityApril 1, 2024foundation_modelmrnasequence_design+1

    Transformer language model for 5' UTR sequences that predicts mRNA translation efficiency, ribosome loading, and protein expression levels.

    RNA
    60Openness
  • M3D

    45138860
    Beijing Academy of Artificial IntelligenceMarch 31, 2024ctimage_text_retrievalinstruction_tuning+9

    Multimodal large language model for 3D medical imaging that handles report generation, visual question answering, and segmentation on CT volumes.

    ImagingLanguage model
    77Openness
  • PLMSearch

    80
    Fudan UniversityMarch 30, 2024homology_detectionlanguage_modelsequence_search

    Protein language model-based sequence search that detects remote homologs with threefold higher sensitivity than MMseqs2 at comparable speed.

    Protein
    90Openness
  • SelfPAB

    1852
    NTNUMarch 25, 2024foundation_modelrepresentation_learningself_supervised+1

    Transformer encoder self-supervised on 100,000 hours of dual-accelerometer data, used as a frozen feature extractor for human activity recognition.

    Biosignals
    78Openness
  • UNI

    7591.6K59.6K
    Mahmood LabMarch 22, 2024dinofoundation_modelhistology+2

    Computational pathology foundation model (ViT-L/16, DINOv2) pretrained on over 100 million H&E tiles from more than 100,000 whole-slide images.

    Pathology
    46Openness
  • CONCH

    5181K77.1K
    Mahmood Lab +1 otherMarch 19, 2024contrastive_learningfoundation_modelhistology+3

    Histopathology vision-language foundation model pretrained on 1.17 million image-caption pairs with contrastive and captioning objectives.

    Imaging
    44Openness
  • University of OxfordMarch 18, 2024cnnmulti_taskresnet+3

    Self-supervised CNN pretrained on 700,000 person-days of UK Biobank accelerometer data for human activity recognition across devices and cohorts.

    Biosignals
    28Openness
  • ERNIE-RNA

    44411.6K
    Tsinghua UniversityMarch 17, 2024foundation_modellanguage_modelsecondary_structure_prediction+1

    RNA language model that builds base-pairing constraints into self-attention, pretrained on 20.4 million sequences for structure and function tasks.

    RNA
    46Openness
  • Harvard Medical School +6 othersMarch 15, 20243d_cnnbiomarker_discoverycontrastive_learning+9

    Self-supervised 3D CT foundation model that extracts general-purpose tumor representations for cancer imaging biomarker discovery and prognosis.

    Imaging
    92Openness
  • University of North Carolina at Chapel HillMarch 9, 2024cnnctfoundation_model+3

    Foundation model for medical image registration that aligns CT and MRI across anatomies and modalities without per-pair optimization or retraining.

    Imaging
    65Openness
  • Baker LabMarch 7, 2024multimodalprotein_designsmall_molecule+1

    Deep network that predicts structures of full biological assemblies: proteins, nucleic acids, small molecules, metals, and covalent modifications.

    Protein
    54Openness
  • Caduceus

    2492212.6K
    Kuleshov LabMarch 5, 2024foundation_modelgenomicslanguage_model+2

    Bidirectional, reverse-complement equivariant DNA language models built on Mamba state space models for long-range variant effect prediction.

    DNA & Gene
    86Openness
  • BrainMass

    2557
    Harbin Institute of Technology (Shenzhen) +1 otherMarch 3, 2024brain_networkdisease_diagnosisfmri+5

    Self-supervised foundation model for functional brain network analysis from resting-state fMRI, pretrained across 30 datasets for disorder diagnosis.

    Biosignals
    18Openness
  • RiNALMo

    169131
    LBCB SciFebruary 29, 2024foundation_modellanguage_modelstructure_prediction

    RNA language model with 650M parameters pretrained on 36 million non-coding RNA sequences, generalizing structure prediction to unseen RNA families.

    RNA
    72Openness
  • VoCo

    22958
    Hong Kong University of Science and TechnologyFebruary 27, 2024contrastive_learningctfoundation_model+5

    Self-supervised pretraining framework for 3D medical image encoders that learns anatomy by predicting where a sub-volume sits within a CT scan.

    Imaging
    69Openness
  • ProLLaMA

    20794185
    PKU-YuanGroupFebruary 26, 2024foundation_modellanguage_modelllama+1

    Protein large language model adapted from LLaMA-2 that unifies sequence generation and superfamily classification in one 7B-parameter framework.

    Protein
    95Openness
  • Stanford UniversityFebruary 26, 2024chemical_mappingcnnfoundation_model+5

    RNA foundation model trained on chemical-mapping data from millions of sequences, predicting reactivity, secondary structure, and degradation.

    RNA
    74Openness
  • scGPT

    1.6K
    Bowang LabFebruary 26, 2024foundation_modelgene_expressionperturbation+1

    Generative pretrained transformer trained on 33 million human cells for single-cell annotation, batch correction, and perturbation prediction.

    Single-cell
    82Openness