All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 697–720 of 943 models
Cell2Sentence
87484226Framework turning single-cell expression profiles into ranked gene-name sequences, letting off-the-shelf language models generate and annotate cells.
Single-cell74OpennessScribblePrompt
22014—Interactive foundation model for biomedical image segmentation, prompted with scribbles, clicks, and bounding boxes to segment unseen structures.
Imaging63OpennessH-optimus-0
110—48.8KHistopathology vision transformer with 1.1B parameters, pretrained on patches from 500,000 H&E whole-slide images across 4,000 clinical practices.
Pathology40OpennessPathChat
—1—Multimodal vision-language copilot for pathology that answers open-ended questions about histology images and reasons about differential diagnoses.
PathologyLanguage model35OpennessAlphaFlow-Lit
—13—Lightweight AlphaFlow variant that fine-tunes only AlphaFold's structure module, keeping the Evoformer frozen to cut conformational sampling cost.
Protein21OpennessscVI (CELLxGENE Census)
1.7K2.4K—Variational autoencoder pretrained on 74 million human single-cell transcriptomes from the CELLxGENE Census for batch correction and cell typing.
Single-cell96OpennessCryoViT
125—Semi-supervised cryo-ET segmentation framework that adapts DINOv2 vision transformers for 3D organelle annotation using sparse 2D slice labels.
Imaging45OpennessHuatuoGPT-Vision
40032.9KShenzhen Research Institute of Big Data +1 otherJune 27, 2024histologyinstruction_tuningmedical_image_understanding+5Open medical multimodal LLMs (7B and 34B) for visual question answering over radiology, pathology, and endoscopy images, trained on PubMedVision.
PathologyLanguage model52OpennessCREMA
—7—Self-supervised foundation model for 12-lead ECG, pairing masked autoencoder pretraining with contrastive regularization for robust diagnostics.
Biosignals10OpennessESM-3
2.9K30913.1KMultimodal generative protein language model reasoning jointly over protein sequence, structure, and function, trained at 98B parameters.
Protein27OpennessBrainMAE
—10—Self-supervised masked autoencoder for functional MRI that learns representations from BOLD time-series with per-ROI embeddings and graph attention.
Biosignals17OpennessHEST Tissue Segmentation
422160—DeepLabV3 segmentation model that separates tissue from glass background in H&E and IHC whole-slide images, as used by the HEST-Library.
Pathology11OpennessOPERA
8318—Respiratory acoustic foundation models pretrained on roughly 136K cough and breathing recordings for disease detection and lung function estimation.
Biosignals59OpennessBrainSegFounder
1576—3D vision-transformer foundation model for multimodal neuroimage segmentation, pretrained self-supervised on brain MRI from 41,400 participants.
Imaging51OpennessScaling-law study of protein language models identifying compute-optimal training for causal and masked objectives on 939 million protein sequences.
Protein22OpennessCellFM
10977—Single-cell foundation model with 800M parameters trained on ~100 million human cells, for annotation, perturbation prediction, and gene analysis.
Single-cell26OpennessscFoundation
42155—Single-cell transcriptomics foundation model with 100 million parameters, pretrained on over 50 million human scRNA-seq profiles for cell embeddings.
Single-cell57OpennessMAIRA-2
—84KMicrosoft Research multimodal LLM for grounded chest X-ray report generation, localizing each described finding with bounding boxes on the image.
ImagingLanguage model35OpennessCytoland
1029—Virtual staining models that translate label-free light microscopy into fluorescent-equivalent predictions of nuclei and plasma membranes.
Imaging99OpennessProt2Token
38——Multi-task protein framework recasting function, binding site, and structure prediction as autoregressive next-token prediction over ESM2 embeddings.
Protein13Openness