Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 697–720 of 2336 models
Molecular docking model that predicts protein-ligand binding poses with multi-stage Riemannian flow matching, yielding physically valid geometry.
Efficient sequence-to-function transformer for regulatory genomics, matching Borzoi-class models while training in about a day on a single GPU.
Protein conformational sampling framework that steers a retrained OpenFold with diverse secondary-structure predictions to recover alternative states.
Self-supervised single-cell foundation model that predicts masked gene embeddings in latent space using a joint-embedding predictive architecture.
Retrieval-augmented inverse folding model that fuses structural motif retrieval with a hybrid attention decoder to design sequences for a backbone.
Retrieval-augmented latent diffusion model for protein binder design, retrieving interfaces in a shared latent space across peptides and antibodies.
Protein structure autoencoder compressing backbone coordinates into a latent space, paired with a latent diffusion model for generative design.
Medical vision-language model that takes visual prompts on an image and returns answers grounded in pixel-level segmentation masks.
Autoregressive protein language model for antibody Fc domains, reinforcement-tuned to design variants with programmable Fc-receptor binding profiles.
De novo ligand design framework that generates protein binders and small molecules by inverting gradients through a differentiable docking model.
Protein foundation model with 3B parameters, pretrained jointly on sequence and 3D structure via masked language modeling and diffusion denoising.
Graph diffusion transformer for in-context molecular design, adapting to new tasks from a few molecule-property demonstrations without fine-tuning.
Compact protein fitness predictor that fuses within-family evolutionary profiles with inverse-folding logits for zero-shot variant effect prediction.
Tabular foundation model adapted for extreme feature counts, enabling in-context prediction on wide omics tables with tens of thousands of features.
Single-molecule localisation microscopy encoder that embeds nanoscale point clouds into a 128-dimension latent space to compare protein architecture.
All-atom protein representation model that learns from each residue's strictly local atomic neighborhood, capturing side-chain geometry and chemistry.
Protein language model conditioned on ensembles of computed conformations, giving state-aware embeddings for interaction, localization, and function.