All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 697720 of 943 models

  • Yale UniversityJuly 21, 2024cell_type_annotationfoundation_modellanguage_model

    Framework turning single-cell expression profiles into ranked gene-name sequences, letting off-the-shelf language models generate and annotate cells.

    Single-cell
    74Openness
  • MIT CSAIL +1 otherJuly 16, 2024cnnfoundation_modelinteractive_segmentation+5

    Interactive foundation model for biomedical image segmentation, prompted with scribbles, clicks, and bounding boxes to segment unseen structures.

    Imaging
    63Openness
  • H-optimus-0

    11048.8K
    BioptimusJuly 11, 2024foundation_modelhistologyvision_model

    Histopathology vision transformer with 1.1B parameters, pretrained on patches from 500,000 H&E whole-slide images across 4,000 clinical practices.

    Pathology
    40Openness
  • PathChat

    1
    Mahmood Lab +4 othersJuly 10, 2024cancerdiagnosisfoundation_model+7

    Multimodal vision-language copilot for pathology that answers open-ended questions about histology images and reasons about differential diagnoses.

    PathologyLanguage model
    35Openness
  • CryoSAM

    1596
    Xu LabJuly 9, 2024cryo_etfoundation_modelparticle_picking+3

    Training-free cryo-ET segmentation framework that adapts SAM and DINOv2 to 3D volumes, segmenting an entire tomogram from a single point prompt.

    Imaging
    82Openness
  • Microsoft ResearchJuly 8, 2024conformational_ensemble_generationfine_tunedflow_matching+4

    Lightweight AlphaFlow variant that fine-tunes only AlphaFold's structure module, keeping the Evoformer frozen to cut conformational sampling cost.

    Protein
    21Openness
  • Chan Zuckerberg InitiativeJuly 1, 2024autoencodercell_type_annotationde_novo_design+6

    Variational autoencoder pretrained on 74 million human single-cell transcriptomes from the CELLxGENE Census for batch correction and cell typing.

    Single-cell
    96Openness
  • CryoViT

    125
    Stanford UniversityJune 30, 2024cryo_etelectron_tomographyfoundation_model+3

    Semi-supervised cryo-ET segmentation framework that adapts DINOv2 vision transformers for 3D organelle annotation using sparse 2D slice labels.

    Imaging
    45Openness
  • Shenzhen Research Institute of Big Data +1 otherJune 27, 2024histologyinstruction_tuningmedical_image_understanding+5

    Open medical multimodal LLMs (7B and 34B) for visual question answering over radiology, pathology, and endoscopy images, trained on PubMedVision.

    PathologyLanguage model
    52Openness
  • CREMA

    7
    Medical AI Co., Ltd.June 26, 2024contrastive_learningecg_diagnosticselectrocardiography+5

    Self-supervised foundation model for 12-lead ECG, pairing masked autoencoder pretraining with contrastive regularization for robust diagnostics.

    Biosignals
    10Openness
  • ESM-3

    2.9K30913.1K
    EvolutionaryScaleJune 25, 2024foundation_modelgenerativeprotein_design+1

    Multimodal generative protein language model reasoning jointly over protein sequence, structure, and function, trained at 98B parameters.

    Protein
    27Openness
  • BrainMAE

    10
    Pennsylvania State UniversityJune 24, 2024age_predictionautoencoderbehavior_prediction+7

    Self-supervised masked autoencoder for functional MRI that learns representations from BOLD time-series with per-ROI embeddings and graph attention.

    Biosignals
    17Openness
  • Mahmood LabJune 23, 2024cnnhistologyimage_preprocessing+2

    DeepLabV3 segmentation model that separates tissue from glass background in H&E and IHC whole-slide images, as used by the HEST-Library.

    Pathology
    11Openness
  • OPERA

    8318
    University of CambridgeJune 23, 2024autoencodercontrastive_learningcough+7

    Respiratory acoustic foundation models pretrained on roughly 136K cough and breathing recordings for disease detection and lung function estimation.

    Biosignals
    59Openness
  • Isoformer

    8971725
    InstaDeepJune 20, 2024foundation_modelgene_expressionmultimodal+4

    Multimodal model fusing pre-trained DNA, RNA, and protein encoders through cross-attention to predict tissue-specific transcript isoform expression.

    RNADNA & GeneProtein
    26Openness
  • University of Florida +1 otherJune 14, 2024foundation_modellesion_segmentationmri+7

    3D vision-transformer foundation model for multimodal neuroimage segmentation, pretrained self-supervised on brain MRI from 41,400 participants.

    Imaging
    51Openness
  • BioMapJune 9, 2024foundation_modellanguage_modelscaling_laws

    Scaling-law study of protein language models identifying compute-optimal training for causal and masked objectives on 939 million protein sequences.

    Protein
    22Openness
  • Hibou

    799053.8K
    HistAIJune 7, 2024foundation_modelhistologyself_supervised+1

    Histopathology foundation models pretrained with DINOv2 on over 1 million whole-slide images, released as Hibou-B and Hibou-L under Apache 2.0.

    Pathology
    46Openness
  • VISTA3D

    2911135.1K
    NVIDIAJune 7, 2024cnnctfoundation_model+5

    Medical image segmentation foundation model for 3D CT and MRI, covering 127 anatomical classes automatically plus interactive point-prompt refinement.

    Imaging
    73Openness
  • CellFM

    10977
    Sun Yat-sen UniversityJune 6, 2024cell_biologyfoundation_modeltranscriptomics+1

    Single-cell foundation model with 800M parameters trained on ~100 million human cells, for annotation, perturbation prediction, and gene analysis.

    Single-cell
    26Openness
  • scFoundation

    42155
    Biomap ResearchJune 6, 2024foundation_modeltranscriptomics

    Single-cell transcriptomics foundation model with 100 million parameters, pretrained on over 50 million human scRNA-seq profiles for cell embeddings.

    Single-cell
    57Openness
  • MAIRA-2

    84K
    Microsoft ResearchJune 6, 2024chest_x_rayinstruction_tuningmultimodal+6

    Microsoft Research multimodal LLM for grounded chest X-ray report generation, localizing each described finding with bounding boxes on the image.

    ImagingLanguage model
    35Openness
  • Cytoland

    1029
    Chan Zuckerberg Biohub +1 otherJune 3, 2024cell_biologyimage_translationmicroscopy+3

    Virtual staining models that translate label-free light microscopy into fluorescent-equivalent predictions of nuclei and plasma membranes.

    Imaging
    99Openness
  • Prot2Token

    38
    University of MissouriJune 3, 2024foundation_modelmulti_taskprotein_function_prediction+1

    Multi-task protein framework recasting function, binding site, and structure prediction as autoregressive next-token prediction over ESM2 embeddings.

    Protein
    13Openness