University of Pennsylvania
An Ivy League research university in Philadelphia that prizes integration across its schools, linking medicine, engineering, and the liberal arts.
Models (7)
mRNAutilus
Atom Bioworks / University of Pennsylvania / GenScript / Duke-NUS Medical School
Released May 31, 2026
Masked discrete-diffusion model over millions of full-length mRNAs, steered by Monte Carlo tree search for joint codon optimization and UTR design.
Chreode
University of North Carolina at Chapel Hill / University of Texas at Austin / University of Pennsylvania
Released May 27, 2026
Cell world model pretrained on a 2.4M-cell mouse embryonic atlas, predicting one-step transcriptional state transitions and perturbation response.
Self-supervised transformer for population genetics, pretrained on 1000 Genomes data, that detects positive selection via haplotype-wise attention.
Peptide developability predictor scoring solubility, permeability, toxicity, and binding from amino-acid sequences or chemically modified SMILES.
Kidney-specialized single-cell foundation model trained across four mammalian species for zero-shot cell-type annotation and batch integration.
Multi-transformer model that predicts tissue-specific alternative splicing outcomes and generalizes zero-shot to unseen cellular conditions.
BiomedGPT
Lehigh University / University of Georgia / Stanford University / Massachusetts General Hospital / University of Pennsylvania / University of Central Florida / UC Santa Cruz / UTHealth Houston / Mayo Clinic / Samsung Research America
Released August 7, 2024
Open-source, lightweight generalist vision-language foundation model for diverse biomedical imaging and text tasks.