Academic

Duke University

Private research university

Location: Durham, NC
Website
5 models(3 Protein, 2 Single-cell)

Models (5)

TD3B

Duke University

Released May 15, 2026

1

Sequence-based discrete-diffusion framework that designs peptide binders with specified agonist or antagonist behavior against GPCR targets.

Protein

xVERSE

Duke University

Released April 14, 2026

A transcriptomics-native single-cell foundation model that couples batch-invariant representation learning with probabilistic virtual-cell generation.

Single-cell

Reverse Distillation (ESM-2)

Duke University

Released March 8, 2026

144

Reverse-distilled ESM-2 checkpoints (up to 15B) producing Matryoshka-style nested embeddings that scale consistently and reach state of the art on ProteinGym.

Protein

moPPIt

Duke University

Released July 31, 2024

413

Motif-specific protein-protein interaction targeting framework that designs de novo peptide binders to disordered regions and conserved epitopes from sequence alone.

Protein

GPTCelltype

Columbia University / Duke University

Released March 25, 2024

216226

An R package that uses GPT-4 to annotate cell types in scRNA-seq data from marker genes, matching expert accuracy across hundreds of cell types and tissues.

Single-cell