All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 769–792 of 943 models
BrainWave (Brant-2)
4731—Foundation model spanning invasive SEEG/iEEG and non-invasive EEG in one backbone, with zero- and few-shot transfer across neurological disorders.
Biosignals10OpennessDNABERT-S
1305214.3KDNA embedding model built on DNABERT-2, using contrastive learning to cluster sequences by species for metagenomic binning without labeled data.
DNA & Gene53OpennessRNAformer
4358—RNA secondary structure prediction from a single sequence, without MSAs, using an axial-attention transformer trained with strict homology controls.
RNA53OpennessscDisInFact
1426—Disentangled variational autoencoder separating batch effects from condition effects in scRNA-seq for key gene detection and perturbation prediction.
Single-cell79OpennessscMulan
626—Generative language model for single-cell transcriptomics with 368M parameters, unifying cell type annotation, batch integration, and cell generation.
Single-cell48OpennessCheXagent
22975935Instruction-tuned vision-language foundation model for chest X-ray interpretation, with 8 billion parameters spanning eight clinical task types.
ImagingLanguage model32OpennessMedSAM
4.4K281.7KPromptable foundation model for universal medical image segmentation, fine-tuned from SAM on 1.57M image-mask pairs across 10 imaging modalities.
Imaging82OpennessProteinINR
9910—Multimodal protein pre-training framework jointly learning sequence, 3D structure, and surface representations via implicit neural representations.
Protein21OpennessRNA-MSM
71107514RNA language model trained on multiple sequence alignments of Rfam families, predicting secondary structure and solvent accessibility from homology.
RNA61OpennessxTrimoPGLM
2152—Unified 100-billion-parameter protein language model combining autoencoding and autoregressive objectives for protein understanding and generation.
Protein30OpennessRudolfV
—74—Self-supervised pathology foundation model with a 300M-parameter vision transformer tile encoder, trained on a multi-stain whole-slide image corpus.
Pathology9OpennessDeepGO
60106—Protein function prediction models that assign Gene Ontology terms using language model embeddings and neuro-symbolic reasoning over GO axioms.
Protein63OpennessCaLM
5445—Codon-level BERT model that captures genomic signals invisible to amino acid models, outperforming billion-parameter PLMs with just 86M parameters.
Protein66OpennessscPROTEIN
5533—Deep graph contrastive learning framework for single-cell proteomics embedding, handling peptide uncertainty, missingness, and batch effects.
Single-cell86OpennessscDiffusion
9463—Diffusion model for synthesizing single-cell RNA-seq data, with guided generation of specific cell types, rare cells, and developmental trajectories.
Single-cell60OpennessRfamGen
421—Generative RNA design model that samples family sequences from a VAE latent space constrained by Rfam covariance models and consensus structure.
RNA10OpennessDerm Foundation
374608Google's dermatology image embedding model that produces 6144-dimensional embeddings for data-efficient skin-condition classifiers.
ImagingPath Foundation
—10291Histopathology foundation model that encodes 224x224 H&E patches into compact 384-dimensional embeddings for tumor and biomarker classifiers.
Pathology17OpennessscPML
1213—Cell type annotation for single-cell RNA-seq that builds a graph per signaling pathway, learning across pathway views with graph neural networks.
Single-cell56Openness