All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 769792 of 943 models

  • Zhejiang UniversityFebruary 15, 2024disease_diagnosiseegfew_shot+6

    Foundation model spanning invasive SEEG/iEEG and non-invasive EEG in one backbone, with zero- and few-shot transfer across neurological disorders.

    Biosignals
    10Openness
  • ZJUNlpFebruary 13, 2024foundation_modelnatural_language

    Conversational T5-based framework that turns scRNA-seq data into cell sentences for cell type annotation and drug sensitivity prediction.

    Single-cellLanguage model
    19Openness
  • DNABERT-S

    1305214.3K
    MAGICS LabFebruary 13, 2024contrastive_learningdnaembeddings+3

    DNA embedding model built on DNABERT-2, using contrastive learning to cluster sequences by species for metagenomic binning without labeled data.

    DNA & Gene
    53Openness
  • RNAformer

    4358
    University of FreiburgFebruary 12, 2024structure_predictiontransformer

    RNA secondary structure prediction from a single sequence, without MSAs, using an axial-attention transformer trained with strict homology controls.

    RNA
    53Openness
  • AlphaFlow

    536258
    MITFebruary 7, 2024conformational_ensemble_generationfine_tunedflow_matching+4

    Protein conformational ensemble generator that fine-tunes AlphaFold 2 with flow matching, sampling protein dynamics beyond a single static structure.

    Protein
    79Openness
  • Zhang LabJanuary 30, 2024batch_correctiongene_expressionperturbation+2

    Disentangled variational autoencoder separating batch effects from condition effects in scRNA-seq for key gene detection and perturbation prediction.

    Single-cell
    79Openness
  • scMulan

    626
    Tsinghua UniversityJanuary 29, 2024foundation_modelgenerativelanguage_model+1

    Generative language model for single-cell transcriptomics with 368M parameters, unifying cell type annotation, batch integration, and cell generation.

    Single-cell
    48Openness
  • CheXagent

    22975935
    Stanford UniversityJanuary 22, 2024chest_x_rayfoundation_modelimage_classification+7

    Instruction-tuned vision-language foundation model for chest X-ray interpretation, with 8 billion parameters spanning eight clinical task types.

    ImagingLanguage model
    32Openness
  • MedSAM

    4.4K281.7K
    Bowang Lab +6 othersJanuary 22, 2024foundation_modelhistologymedical_image_segmentation+4

    Promptable foundation model for universal medical image segmentation, fine-tuned from SAM on 1.57M image-mask pairs across 10 imaging modalities.

    Imaging
    82Openness
  • ProteinINR

    9910
    Kakao BrainJanuary 16, 2024foundation_modelrepresentation_learningstructure_prediction

    Multimodal protein pre-training framework jointly learning sequence, 3D structure, and surface representations via implicit neural representations.

    Protein
    21Openness
  • RNA-MSM

    71107514
    Peking University +1 otherJanuary 11, 2024foundation_modellanguage_modelstructure_prediction

    RNA language model trained on multiple sequence alignments of Rfam families, predicting secondary structure and solvent accessibility from homology.

    RNA
    61Openness
  • xTrimoPGLM

    2152
    BioMap +1 otherJanuary 11, 2024foundation_modelprotein_designstructure_prediction+1

    Unified 100-billion-parameter protein language model combining autoencoding and autoregressive objectives for protein understanding and generation.

    Protein
    30Openness
  • EEGFormer

    64
    Microsoft +1 otherJanuary 11, 2024anomaly_detectioneegfoundation_model+5

    EEG foundation model pretrained with vector-quantized self-supervision, yielding interpretable discrete codes that transfer to seizure detection.

    Biosignals
    22Openness
  • RudolfV

    74
    Aignostics +7 othersJanuary 8, 2024biomarker_predictionfeature_extractionfoundation_model+3

    Self-supervised pathology foundation model with a 300M-parameter vision transformer tile encoder, trained on a multi-stain whole-slide image corpus.

    Pathology
    9Openness
  • IMPA

    26
    Theis LabJanuary 8, 2024autoencodercell_biologydrug_discovery+5

    Generative image perturbation autoencoder predicting cellular morphological responses to chemical and genetic perturbations from control images.

    Single-cell
    53Openness
  • DeepGO

    60106
    Bio-Ontology Research GroupJanuary 1, 2024gene_ontologyprotein_function_prediction

    Protein function prediction models that assign Gene Ontology terms using language model embeddings and neuro-symbolic reasoning over GO axioms.

    Protein
    63Openness
  • CaLM

    5445
    Oxford Protein Informatics Group (OPIG)January 1, 2024bertcodondna+3

    Codon-level BERT model that captures genomic signals invisible to amino acid models, outperforming billion-parameter PLMs with just 86M parameters.

    Protein
    66Openness
  • scPROTEIN

    5533
    TencentAILabHealthcareJanuary 1, 2024foundation_model

    Deep graph contrastive learning framework for single-cell proteomics embedding, handling peptide uncertainty, missingness, and batch effects.

    Single-cell
    86Openness
  • Tsinghua UniversityJanuary 1, 2024diffusionfoundation_modelgenerative

    Diffusion model for synthesizing single-cell RNA-seq data, with guided generation of specific cell types, rare cells, and developmental trajectories.

    Single-cell
    60Openness
  • RfamGen

    421
    Kyoto University +1 otherJanuary 1, 2024foundation_modelsequence_designvariational_autoencoder

    Generative RNA design model that samples family sequences from a VAE latent space constrained by Rfam covariance models and consensus structure.

    RNA
    10Openness
  • Google ResearchDecember 19, 2023cnncontrastive_learningdermatology+5

    Google's dermatology image embedding model that produces 6144-dimensional embeddings for data-efficient skin-condition classifiers.

    Imaging
  • Google ResearchDecember 19, 2023biomarker_predictioncancer_detectionembeddings+4

    Histopathology foundation model that encodes 224x224 H&E patches into compact 384-dimensional embeddings for tumor and biomarker classifiers.

    Pathology
    17Openness
  • ATOM-1

    18
    Atomic AIDecember 14, 2023chemical_mappingfoundation_modelstructure_prediction

    RNA foundation model trained on chemical mapping data, with embeddings adapted to predict RNA secondary and tertiary structure and mRNA stability.

    RNA
    6Openness
  • scPML

    1213
    Shenzhen UniversityDecember 14, 2023cell_type_annotationgraph_neural_network

    Cell type annotation for single-cell RNA-seq that builds a graph per signaling pathway, learning across pathway views with graph neural networks.

    Single-cell
    56Openness