Academic

Stony Brook University

A public flagship research university in the SUNY system, with research spanning the physical sciences, computation, medicine, and biology.

Location: Stony Brook, NY
Website
3 models(2 Protein, 1 Imaging)

Models (3)

OmniNovo

Fudan University / Shanghai AI Laboratory / Tsinghua University / Westlake University / Tongji University / Shanghai Innovation Institute / University of British Columbia / Zhejiang University / Stony Brook University

Released December 13, 2025

De novo peptide sequencing transformer that reads modified and unmodified peptides directly from tandem mass spectra without a reference database.

Protein

NeuroRAD-FM

Stony Brook University / Columbia University

Released September 18, 2025

Neuro-oncology foundation model for brain tumor MRI, using distributionally robust pretraining for molecular subtyping and survival prediction.

Imaging

MHC-Fine

Stony Brook University

Released November 29, 2023

9

AlphaFold fine-tuned via OpenFold on 944 high-resolution MHC-peptide structures, reaching median peptide RMSD of 0.65 Å on held-out complexes.

Protein