Academic

UC Berkeley

University of California, Berkeley

Location: Berkeley, CA
Website
7 models(4 Protein, 2 DNA & Gene, 1 Small molecule)

Labs & Groups (1)

Models (7)

LinkLlama

UC Berkeley

Released April 16, 2026

28

A Llama 3 model fine-tuned on a ChEMBL corpus that designs molecular linkers from natural-language geometry and physicochemical prompts, without task-specific re-training.

Small molecule

PEINT

UC Berkeley

Released February 20, 2026

3

A deep generative model of protein evolution in time that captures indel dynamics and epistasis to simulate realistic evolutionary trajectories yielding functional proteins.

Protein

ProteinDT

UC Berkeley

Released January 1, 2025

104107

A multimodal framework for text-guided protein design, enabling sequence generation, zero-shot editing, and property prediction via contrastive learning.

Protein

PLAID

UC Berkeley / Genentech

Released December 2, 2024

12127

Latent diffusion model for controllable all-atom protein generation that co-designs sequence and structure while training on sequences alone.

Protein

GPN

Song Lab

Released October 31, 2023

354343

A DNA language model for unsupervised genome-wide variant effect prediction, trained on multispecies genomes via masked language modeling without functional annotation labels.

DNA & Gene

GPN-MSA

UC Berkeley

Released October 11, 2023

81343

Transformer-based DNA language model using whole-genome multispecies alignments for genome-wide variant effect prediction across coding and non-coding regions.

DNA & Gene

TAPE

UC Berkeley

Released June 19, 2019

1K739

Benchmark suite of five biologically relevant tasks for evaluating protein sequence representation learning, covering structure, homology, and engineering.

Protein