Academic

UC Berkeley

A public research university in Berkeley, California, joining computational biology, statistics, and engineering in genomics and protein design.

Location: Berkeley, CA
Website
6 models(3 Protein, 2 DNA & Gene, 1 Small molecule)

Labs & Groups (1)

Models (6)

LinkLlama

UC Berkeley

Released April 16, 2026

11510

Molecular linker design model fine-tuned from Llama 3 that emits PROTAC and fragment linkers as SMILES from natural-language geometry prompts.

Small molecule

PEINT

UC Berkeley

Released February 20, 2026

6

Protein evolution model that learns indel dynamics and epistasis from unaligned sequences, simulating trajectories that yield functional proteins.

Protein

ProteinDT

UC Berkeley

Released January 1, 2025

106107

Text-guided protein design framework aligning language with sequences for text-conditioned generation, zero-shot editing, and property prediction.

Protein

PLAID

UC Berkeley / Genentech

Released December 2, 2024

14127

Latent diffusion model for controllable all-atom protein generation that co-designs sequence and structure while training on sequences alone.

Protein

GPN

Song Lab

Released October 31, 2023

31.7K349

DNA language model for genome-wide variant effect prediction, trained by masked language modeling on multispecies genomes with no labeled data.

DNA & Gene

GPN-MSA

UC Berkeley

Released October 11, 2023

90232349

DNA language model for variant effect prediction across coding and non-coding regions, using whole-genome alignments of 100 vertebrate species.

DNA & Gene