UC Berkeley

University of California, Berkeley

Location: Berkeley, CA

Website

4 models(2 Protein, 2 DNA & Gene)

Labs & Groups (1)

Lab

Song Lab

Research lab focused on computational biology and machine learning

1 model

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Models (4)

Protein

ProteinDT

UC Berkeley

A multimodal framework for text-guided protein design, enabling sequence generation, zero-shot editing, and property prediction via contrastive learning.

10695

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DNA & Gene

GPN

Song Lab

A DNA language model for unsupervised genome-wide variant effect prediction, trained on multispecies genomes via masked language modeling without functional annotation labels.

339

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DNA & Gene

GPN-MSA

UC Berkeley

Transformer-based DNA language model using whole-genome multispecies alignments for genome-wide variant effect prediction across coding and non-coding regions.

33965

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Protein

TAPE

UC Berkeley

Benchmark suite of five biologically relevant tasks for evaluating protein sequence representation learning, covering structure, homology, and engineering.

738

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