Academic

Johns Hopkins University

A private research university in Baltimore where a landmark school of medicine anchors work across engineering, imaging, and public health.

Location: Baltimore, MD
Website
9 models(4 Imaging, 3 Protein, 1 Pathology, 1 Language model, 1 DNA & Gene)

Models (9)

GermRL

Johns Hopkins University

Released June 11, 2026

41

Reinforcement learning framework that fine-tunes the ProGen2-OAS antibody language model with GRPO to cut germline bias in generated sequences.

Protein

AF2Dock

Johns Hopkins University / GrayLab

Released April 24, 2026

115

Protein-protein docking model adapting AlphaFold-Multimer with a docking module and flow-matching training to assemble subunits without MSAs.

Protein

SMILE

Johns Hopkins University

Released April 17, 2026

Schrödinger-bridge diffusion model for virtual multiplex staining, translating routine H&E histology into multiplex immunohistochemistry images.

Pathology

BrainFM

Johns Hopkins University / Massachusetts General Hospital / Harvard Medical School / Danish Research Centre for Magnetic Resonance / University College London

Released August 30, 2025

820

Modality-agnostic foundation model for human brain imaging that runs five core neuroimaging tasks across uncalibrated CT and MRI without retraining.

Imaging

Med-R1

Emory University / University of Southern California / University of Tokyo / Johns Hopkins University / Georgia Institute of Technology

Released March 18, 2025

679128

Medical vision-language model trained with reinforcement learning for generalizable reasoning across eight imaging modalities and five question types.

ImagingLanguage model

GenomeOcean

DOE Joint Genome Institute / Northwestern University / Johns Hopkins University / University of California, Merced / University of California, Berkeley / Miami University / Illumina

Released February 5, 2025

242.2K150

4B-parameter generative genome foundation model trained on assembled environmental metagenomes for microbial representation and de novo DNA design.

DNA & Gene

DFMDock

Johns Hopkins University

Released September 27, 2024

755

Diffusion model for protein-protein docking that unifies pose sampling and energy-based ranking, works without MSAs, and generalizes to new targets.

Protein

M4oE

Hong Kong Baptist University / Johns Hopkins University

Released May 15, 2024

6655

Mixture-of-Experts foundation model for medical image segmentation that generalizes across imaging modalities and clinical centers.

Imaging

CLIP-Driven Universal Model

City University of Hong Kong / Johns Hopkins University / NVIDIA

Released October 1, 2023

356677

Abdominal CT segmentation model driven by CLIP text embeddings, covering 25 organs and 6 tumor types with zero-shot extension to new categories.

Imaging