Labs & Groups (1)
Models (5)
Long-context plant DNA language model, 676M parameters on a Mamba2 backbone, pretrained on 65 angiosperm genomes for cross-species variant annotation.
Nucleotide Transformer v3 (NTv3)
InstaDeep / Research Institute of Molecular Pathology (IMP) / Medical University of Vienna / Cornell University / Cold Spring Harbor Laboratory
Released December 22, 2025
Multi-species genomics foundation model spanning representation learning, functional-track prediction, and sequence generation at 1 Mb context.
BrainMorph
Cornell University / Weill Cornell Medicine / MIT CSAIL / Massachusetts General Hospital
Released May 22, 2024
Keypoint-based foundation model for brain MRI registration, pretrained on over 100,000 3D volumes for rigid, affine, and deformable alignment.
Bidirectional, reverse-complement equivariant DNA language models built on Mamba state space models for long-range variant effect prediction.
UniverSeg
MIT CSAIL / Cornell University / Massachusetts General Hospital / Harvard Medical School
Released April 12, 2023
Medical image segmentation model that solves unseen segmentation tasks in context from a few labeled examples, with no retraining or fine-tuning.