All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 793–816 of 943 models
Brant
4293—500M-parameter transformer model pretrained on intracranial SEEG recordings for neural signal forecasting, imputation, and seizure detection.
Biosignals75OpennessxTrimoGene
421——Asymmetric encoder-decoder transformer for single-cell RNA-seq that encodes only non-zero genes, cutting FLOPs 10-100x versus standard transformers.
RNA10OpennessSelf-supervised foundation models for wearable PPG and ECG signals, trained with contrastive learning on Apple Heart and Movement Study recordings.
Biosignals5OpennessHealth acoustics foundation model that turns short clips of coughs and breaths into embeddings for building acoustic biomarker models with less data.
BiosignalsT3D
—120—Vision-language pretraining for 3D CT volumes, aligning scans with their radiology reports for zero-shot classification, retrieval, and segmentation.
ImagingLanguage model12OpennessBioCLIP
26824022.5KVision foundation model for the tree of life, trained on TreeOfLife-10M for zero-shot species classification of plants, animals, and fungi.
Imaging93OpennessUCE
311168—Single-cell foundation model producing species-agnostic cell embeddings by representing genes through frozen ESM-2 protein language model embeddings.
Single-cell65OpennessMHC-Fine
—168—AlphaFold fine-tuned via OpenFold on 944 high-resolution MHC-peptide structures, reaching median peptide RMSD of 0.65 Å on held-out complexes.
Protein35OpennessMAIRA-1
—16—Radiology-specific multimodal LLM that generates the findings section of a chest X-ray report from a frontal image, pairing RAD-DINO with Vicuna-7B.
ImagingLanguage model6OpennessSegVol
38658589Promptable 3D foundation model for volumetric CT segmentation, covering over 200 anatomical categories through point, box, and free-text prompts.
Imaging100OpennessCellSAM
20641—Universal cell segmentation model adapting Meta's SAM to segment mammalian cells, yeast, and bacteria across imaging modalities without retraining.
Imaging32OpennessESMBind & QBind
8152LoRA and QLoRA fine-tuning of ESM-2 for token-level prediction of protein binding sites and post-translational modification sites from sequence alone.
Protein93OpennesstrRosettaRNA
372—RNA 3D structure prediction pipeline pairing a transformer (RNAformer) that predicts inter-nucleotide geometries with Rosetta energy minimization.
RNA72OpennessNeuro-GPT
228101—University of Southern California +1 otherNovember 7, 2023brain_computer_interfaceeegfoundation_model+5EEG foundation model that pairs a convolutional encoder with a GPT backbone, pretrained by masked-segment reconstruction for low-data BCI decoding.
Biosignals46OpennessChroma
824——Diffusion model for programmable protein design that jointly samples structures and sequences, conditioned on symmetry, shape, or text prompts.
Protein53OpennessProGen2
705——Protein language models from 151M to 6.4B parameters, trained on over a billion sequences for sequence generation and zero-shot fitness prediction.
Protein55OpennessQilin-Med-VL
65388Chinese medical vision-language model pairing a Vision Transformer with an LLM to caption medical images and answer clinical questions in Chinese.
Language modelPathology44OpennessSAM-Med3D
944618—Fully 3D promptable segmentation foundation model for volumetric CT and MR, encoding whole volumes so anatomy can be segmented from one prompt point.
Imaging96OpennessCXR-LLaVA
5439188Seoul National University +1 otherOctober 22, 2023abnormality_classificationchest_x_rayinstruction_tuning+6Chest X-ray vision-language model that generates free-text radiology reports, pairing a CXR-specific image encoder with a 7B LLaMA-2 language model.
ImagingLanguage model27OpennessCXR-CLIP
123138—Large-scale chest X-ray vision-language pretraining model that learns image-report alignment for zero-shot and few-shot radiograph classification.
Imaging18OpennessBioT5
127—206Encoder-decoder framework unifying molecules, proteins, and natural language with SELFIES notation for cross-modal drug discovery tasks.
Language modelSmall moleculeProtein74Openness