All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 793816 of 943 models

  • Brant

    4293
    Zhejiang UniversityDecember 10, 2023foundation_modelimputationintracranial_eeg+5

    500M-parameter transformer model pretrained on intracranial SEEG recordings for neural signal forecasting, imputation, and seizure detection.

    Biosignals
    75Openness
  • xTrimoGene

    421
    BioMapDecember 10, 2023foundation_modelrepresentation_learning

    Asymmetric encoder-decoder transformer for single-cell RNA-seq that encodes only non-zero genes, cutting FLOPs 10-100x versus standard transformers.

    RNA
    10Openness
  • MMM

    111
    Microsoft +1 otherDecember 10, 2023brain_computer_interfaceeegemotion_recognition+5

    EEG pretraining framework mapping any electrode montage to a unified topology for topology-agnostic representations that transfer across datasets.

    Biosignals
    60Openness
  • AppleDecember 8, 2023cardiovascularcnncontrastive_learning+6

    Self-supervised foundation models for wearable PPG and ECG signals, trained with contrastive learning on Apple Heart and Movement Study recordings.

    Biosignals
    5Openness
  • Google ResearchDecember 4, 2023acoustic_biomarkersaudio_classificationautoencoder+6

    Health acoustics foundation model that turns short clips of coughs and breaths into embeddings for building acoustic biomarker models with less data.

    Biosignals
  • T3D

    120
    Imperial College London +4 othersDecember 3, 2023cnncontrastive_learningcross_modal_retrieval+8

    Vision-language pretraining for 3D CT volumes, aligning scans with their radiology reports for zero-shot classification, retrieval, and segmentation.

    ImagingLanguage model
    12Openness
  • BioCLIP

    26824022.5K
    Imageomics InstituteNovember 30, 2023biodiversitycontrastive_learningfoundation_model+5

    Vision foundation model for the tree of life, trained on TreeOfLife-10M for zero-shot species classification of plants, animals, and fungi.

    Imaging
    93Openness
  • UCE

    311168
    Stanford UniversityNovember 29, 2023cross_speciesfoundation_modeltransformer+1

    Single-cell foundation model producing species-agnostic cell embeddings by representing genes through frozen ESM-2 protein language model embeddings.

    Single-cell
    65Openness
  • MHC-Fine

    168
    Stony Brook UniversityNovember 29, 2023antibodyfine_tunedstructure_prediction+2

    AlphaFold fine-tuned via OpenFold on 944 high-resolution MHC-peptide structures, reaching median peptide RMSD of 0.65 Å on held-out complexes.

    Protein
    35Openness
  • MAIRA-1

    16
    Microsoft ResearchNovember 22, 2023chest_x_raymultimodalmultimodal_transformer+4

    Radiology-specific multimodal LLM that generates the findings section of a chest X-ray report from a frontal image, pairing RAD-DINO with Vicuna-7B.

    ImagingLanguage model
    6Openness
  • SegVol

    38658589
    Beijing Academy of Artificial IntelligenceNovember 22, 2023ctfoundation_modelmultimodal+4

    Promptable 3D foundation model for volumetric CT segmentation, covering over 200 anatomical categories through point, box, and free-text prompts.

    Imaging
    100Openness
  • CellSAM

    20641
    Van Valen LabNovember 20, 2023cell_biologyfoundation_modelsegmentation+2

    Universal cell segmentation model adapting Meta's SAM to segment mammalian cells, yeast, and bacteria across imaging modalities without retraining.

    Imaging
    32Openness
  • IgLM

    191129
    GrayLabNovember 15, 2023antibodyfoundation_modelimmunology+1

    Generative language model trained on 558 million antibody sequences for infilling-based design of CDR loops and full-length immunoglobulin sequences.

    Protein
    12Openness
  • Independent ResearcherNovember 14, 2023binding_site_predictionfine_tunedtransfer_learning+2

    LoRA and QLoRA fine-tuning of ESM-2 for token-level prediction of protein binding sites and post-translational modification sites from sequence alone.

    Protein
    93Openness
  • Yang LabNovember 9, 2023transformer

    RNA 3D structure prediction pipeline pairing a transformer (RNAformer) that predicts inter-nucleotide geometries with Rosetta energy minimization.

    RNA
    72Openness
  • Neuro-GPT

    228101
    University of Southern California +1 otherNovember 7, 2023brain_computer_interfaceeegfoundation_model+5

    EEG foundation model that pairs a convolutional encoder with a GPT backbone, pretrained by masked-segment reconstruction for low-data BCI decoding.

    Biosignals
    46Openness
  • Chroma

    824
    Generate:BiomedicinesNovember 1, 2023diffusiongenerativegraph_neural_network+3

    Diffusion model for programmable protein design that jointly samples structures and sequences, conditioned on symmetry, shape, or text prompts.

    Protein
    53Openness
  • GPN

    34931.8K
    Song LabOctober 31, 2023dnafoundation_modelgenomics+2

    DNA language model for genome-wide variant effect prediction, trained by masked language modeling on multispecies genomes with no labeled data.

    DNA & Gene
    93Openness
  • ProGen2

    705
    SalesforceOctober 30, 2023foundation_modelgenerativelanguage_model+1

    Protein language models from 151M to 6.4B parameters, trained on over a billion sequences for sequence generation and zero-shot fitness prediction.

    Protein
    55Openness
  • Alibaba GroupOctober 27, 2023histologyinstruction_tuningmultimodal+4

    Chinese medical vision-language model pairing a Vision Transformer with an LLM to caption medical images and answer clinical questions in Chinese.

    Language modelPathology
    44Openness
  • SAM-Med3D

    944618
    Shanghai AI LaboratoryOctober 23, 2023foundation_modelradiologysegmentation+3

    Fully 3D promptable segmentation foundation model for volumetric CT and MR, encoding whole volumes so anatomy can be segmented from one prompt point.

    Imaging
    96Openness
  • CXR-LLaVA

    5439188
    Seoul National University +1 otherOctober 22, 2023abnormality_classificationchest_x_rayinstruction_tuning+6

    Chest X-ray vision-language model that generates free-text radiology reports, pairing a CXR-specific image encoder with a 7B LLaMA-2 language model.

    ImagingLanguage model
    27Openness
  • CXR-CLIP

    123138
    Kakao BrainOctober 20, 2023bertchest_x_raycnn+8

    Large-scale chest X-ray vision-language pretraining model that learns image-report alignment for zero-shot and few-shot radiograph classification.

    Imaging
    18Openness
  • BioT5

    127206
    Renmin University of ChinaOctober 11, 2023drug_discoveryfoundation_modellanguage_model+1

    Encoder-decoder framework unifying molecules, proteins, and natural language with SELFIES notation for cross-modal drug discovery tasks.

    Language modelSmall moleculeProtein
    74Openness