All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 7396 of 111 filtered models

  • MagicDock

    Beijing Institute of TechnologyOctober 10, 2025autoencoderde_novo_designdrug_discovery+5

    De novo ligand design framework that generates protein binders and small molecules by inverting gradients through a differentiable docking model.

    ProteinSmall molecule
    33Openness
  • Stockholm UniversityOctober 3, 2025de_novo_designgenerativepeptides+5

    GPCR structure prediction and peptide design model that generates linear and cyclic peptide agonists carrying noncanonical amino acids, zero-shot.

    Protein
    58Openness
  • Kanzi

    384
    CaltechOctober 3, 2025autoencoderflow_matchinggenerative+4

    Flow-based protein structure tokenizer, a diffusion autoencoder replacing SE(3)-invariant components with global coordinates and standard attention.

    Protein
    63Openness
  • University of Texas at Austin +1 otherOctober 3, 2025de_novo_designdiffusionflow_matching+3

    Distilled few-step protein backbone generator that adapts Score Identity Distillation to Proteina for over 20x faster de novo structure sampling.

    Protein
    76Openness
  • Caliby

    1075
    Stanford UniversitySeptember 30, 2025generativeinverse_foldingpotts_model+1

    Potts-model inverse folding that conditions on a structural ensemble rather than a single backbone, improving designability and self-consistency.

    Protein
    72Openness
  • EiRA

    2
    Hunan UniversitySeptember 2, 2025binder_designdnagenerative+6

    Protein binder design model post-trained from a multimodal protein language model to bind proteins, peptides, small molecules, and nucleic acids.

    Protein
    13Openness
  • PoET-2

    2710
    OpenProtein.AIAugust 5, 2025foundation_modellanguage_modelprotein_design+5

    Multimodal, retrieval-augmented protein foundation model that learns family-specific evolutionary constraints with optional structure conditioning.

    Protein
    37Openness
  • Microsoft ResearchJuly 21, 2025language_modelmixture_of_expertsprotein_design+2

    Protein language models trained on billions of natural and synthetic sequences for de novo design and zero-shot mutation-effect prediction.

    Protein
    96Openness
  • Chai-2

    58
    Chai DiscoveryJuly 5, 2025antibodyantibody_designde_novo_design+3

    Multimodal all-atom generative model for zero-shot de novo antibody and protein-binder design, validated by wet-lab hit rates from small batches.

    Protein
    7Openness
  • ProGen3

    11454217
    ProfluentApril 16, 2025de_novo_designfoundation_modelgenerative+6

    Sparse mixture-of-experts autoregressive protein language model family pretrained on 1.5 trillion amino acid tokens with compute-optimal scaling.

    Protein
    33Openness
  • RAG-ESM

    2716
    EPFLApril 2, 2025de_novo_designgenerativemotif_scaffolding+5

    Retrieval-augmented protein language model that conditions ESM-2 on homologous sequences via cross-attention for conditional sequence generation.

    Protein
    90Openness
  • Pinal

    942914
    Westlake UniversityApril 2, 2025foundation_modellanguage_modelprotein_design+1

    De novo protein design from natural language: a 16B-parameter framework turning text descriptions into sequences via structure-conditioned generation.

    Protein
    42Openness
  • LigandMPNN

    608233
    Institute for Protein DesignMarch 1, 2025enzyme_designgraph_neural_networkligand_binding+2

    Protein sequence design model that represents small molecules, nucleotides, and metals at atomic resolution, enabling ligand-aware enzyme design.

    Protein
    66Openness
  • NatureLM

    3537
    Microsoft Research AI for ScienceFebruary 11, 2025drug_discoveryfoundation_modelmaterials_science+2

    Unified science foundation model treating molecules, proteins, RNA, DNA, and materials as one sequence language, in 1B, 8B, and 46.7B sizes.

    Language modelSmall moleculeProtein
    27Openness
  • PLAID

    12714
    UC Berkeley +1 otherDecember 2, 2024de_novo_designdiffusiongenerative+4

    Latent diffusion model for controllable all-atom protein generation that co-designs sequence and structure while training on sequences alone.

    Protein
    77Openness
  • genbio.aiNovember 29, 2024foundation_modellanguage_modelmixture_of_experts+6

    Mixture-of-experts protein language model scaling to 16 billion parameters, applied to variant effect prediction and de novo protein design.

    Protein
    29Openness
  • p-IgGen

    13297
    Oxford Protein Informatics Group (OPIG) +1 otherNovember 9, 2024antibodyde_novo_designfoundation_model+5

    Antibody language model that generates paired heavy and light variable domains, with a developability-conditioned variant for manufacturable designs.

    Protein
    68Openness
  • BC-Design

    213
    Gerstein Lab +1 otherNovember 3, 2024antibodyantibody_designenzyme+7

    Biochemistry-aware inverse folding model that augments backbone geometry with physicochemical point clouds, reaching ~90% sequence recovery on CATH.

    Protein
    75Openness
  • MAMMAL

    11891K
    IBM ResearchOctober 28, 2024cell_type_annotationdrug_discoveryfoundation_model+7

    Multi-modal, multi-task biological foundation model trained on 2 billion samples spanning proteins, small molecules, and single-cell gene expression.

    ProteinSmall moleculeSingle-cell
    74Openness
  • moPPIt

    144
    Duke UniversityJuly 31, 2024binding_site_predictionflow_matchinggenerative+6

    De novo peptide binder design framework that targets specific motifs, including disordered regions and conserved epitopes, from target sequence alone.

    Protein
    18Openness
  • ESM-3

    2.9K31313.2K
    EvolutionaryScaleJune 25, 2024foundation_modelgenerativeprotein_design+1

    Multimodal generative protein language model reasoning jointly over protein sequence, structure, and function, trained at 98B parameters.

    Protein
    27Openness
  • LOBSTER

    1657
    Prescient Design +1 otherMay 15, 2024fitness_predictionfoundation_modellanguage_model+5

    Efficient protein language model library from Prescient Design enabling high-quality sequence representations and fitness prediction in 24 GPU hours.

    Protein
    69Openness
  • Microsoft ResearchMay 13, 2024cryo_emdiffusiondrug_discovery+8

    Deep learning framework predicting equilibrium distributions of molecular systems, enabling efficient ensemble generation and conformation sampling.

    Protein
    46Openness
  • AlphaFold 3

    8.3K12.5K
    Google DeepMindMay 8, 2024multimodalprotein_designstructure_prediction

    Diffusion-based structure prediction model for biomolecular complexes, spanning proteins with DNA, RNA, small molecules, ions, and modified residues.

    Protein
    28Openness