All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 73–96 of 111 filtered models
MagicDock
———De novo ligand design framework that generates protein binders and small molecules by inverting gradients through a differentiable docking model.
ProteinSmall molecule33OpennessRareFoldGPCR
142—GPCR structure prediction and peptide design model that generates linear and cyclic peptide agonists carrying noncanonical amino acids, zero-shot.
Protein58OpennessSiD-Protein
11—Distilled few-step protein backbone generator that adapts Score Identity Distillation to Proteina for over 20x faster de novo structure sampling.
Protein76OpennessCaliby
1075—Potts-model inverse folding that conditions on a structural ensemble rather than a single backbone, improving designability and self-consistency.
Protein72OpennessEiRA
—2—Protein binder design model post-trained from a multimodal protein language model to bind proteins, peptides, small molecules, and nucleic acids.
Protein13OpennessPoET-2
2710—Multimodal, retrieval-augmented protein foundation model that learns family-specific evolutionary constraints with optional structure conditioning.
Protein37OpennessDayhoff Atlas
9911—Protein language models trained on billions of natural and synthetic sequences for de novo design and zero-shot mutation-effect prediction.
Protein96OpennessChai-2
—58—Multimodal all-atom generative model for zero-shot de novo antibody and protein-binder design, validated by wet-lab hit rates from small batches.
Protein7OpennessPinal
942914De novo protein design from natural language: a 16B-parameter framework turning text descriptions into sequences via structure-conditioned generation.
Protein42OpennessLigandMPNN
608233—Protein sequence design model that represents small molecules, nucleotides, and metals at atomic resolution, enabling ligand-aware enzyme design.
Protein66OpennessNatureLM
—3537Unified science foundation model treating molecules, proteins, RNA, DNA, and materials as one sequence language, in 1B, 8B, and 46.7B sizes.
Language modelSmall moleculeProtein27OpennessPLAID
12714—Latent diffusion model for controllable all-atom protein generation that co-designs sequence and structure while training on sequences alone.
Protein77OpennessAIDO.Protein
1682290Mixture-of-experts protein language model scaling to 16 billion parameters, applied to variant effect prediction and de novo protein design.
Protein29Opennessp-IgGen
13297Oxford Protein Informatics Group (OPIG) +1 otherNovember 9, 2024antibodyde_novo_designfoundation_model+5Antibody language model that generates paired heavy and light variable domains, with a developability-conditioned variant for manufacturable designs.
Protein68OpennessBC-Design
213—Biochemistry-aware inverse folding model that augments backbone geometry with physicochemical point clouds, reaching ~90% sequence recovery on CATH.
Protein75OpennessMAMMAL
11891KMulti-modal, multi-task biological foundation model trained on 2 billion samples spanning proteins, small molecules, and single-cell gene expression.
ProteinSmall moleculeSingle-cell74OpennessmoPPIt
144—De novo peptide binder design framework that targets specific motifs, including disordered regions and conserved epitopes, from target sequence alone.
Protein18OpennessESM-3
2.9K31313.2KMultimodal generative protein language model reasoning jointly over protein sequence, structure, and function, trained at 98B parameters.
Protein27OpennessLOBSTER
1657—Efficient protein language model library from Prescient Design enabling high-quality sequence representations and fitness prediction in 24 GPU hours.
Protein69OpennessDistributional Graphormer
2.5K158—Deep learning framework predicting equilibrium distributions of molecular systems, enabling efficient ensemble generation and conformation sampling.
Protein46OpennessAlphaFold 3
8.3K12.5K—Diffusion-based structure prediction model for biomolecular complexes, spanning proteins with DNA, RNA, small molecules, ions, and modified residues.
Protein28Openness