All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 124 of 111 filtered models

  • GPFlow

    University of Illinois Urbana-ChampaignJuly 10, 2026flow_matchinggenerativemotif_scaffolding+4

    Variable-length generative protein design across structure, sequence, motif scaffolding, and peptide co-design via a generalized Poisson flow.

    Protein
    18Openness
  • IgGM2

    Tencent AI for Life Science Lab +3 othersJuly 9, 2026antibodydiffusionfoundation_model+4

    All-atom foundation model for immune-receptor design that predicts structures and co-designs CDR sequences for antibodies, nanobodies, and TCRs.

    Protein
    32Openness
  • BioMatrix

    41167
    Shanghai AI Laboratory +1 otherJune 20, 2026foundation_modellanguage_modelmolecule_generation+6

    Decoder-only foundation model that unifies sequences, 3D structures, and natural language for small molecules and proteins in one shared token space.

    ProteinSmall moleculeLanguage model
    67Openness
  • BoltzProt-1

    4.1K
    BoltzJune 16, 2026antibodybinder_designfoundation_model+5

    De novo protein binder and nanobody design pipeline that ranks candidates by a protein-protein interaction model rather than structural confidence.

    Protein
    11Openness
  • TCRDiff

    7
    Monash UniversityJune 14, 2026antibodyde_novo_designdiffusion+5

    Conditional denoising diffusion model that designs antigen-specific TCR CDR3β sequences conditioned on peptide-MHC targets and germline V-genes.

    Protein
    75Openness
  • MoE-Bind

    2
    University of North BengalJune 13, 2026autoregressivede_novo_designgenerative+6

    Protein binder generator producing receptor-conditioned binders from sequence alone, using a sparse Mixture-of-Experts transformer with no 3D input.

    Protein
    54Openness
  • GermRL

    14
    Johns Hopkins UniversityJune 11, 2026antibodyantibody_designde_novo_design+6

    Reinforcement learning framework that fine-tunes the ProGen2-OAS antibody language model with GRPO to cut germline bias in generated sequences.

    Protein
    65Openness
  • HBDesigner

    16
    Kuhlman Lab +1 otherJune 11, 2026generativegraph_neural_networkhydrogen_bond_network_design+3

    Message-passing neural network that designs buried hydrogen-bond networks onto protein backbones, combining learned placement with PyRosetta scoring.

    Protein
    60Openness
  • Promera

    83
    MIT +1 otherJune 10, 2026antibodybinder_designdiffusion+5

    Unified all-atom generative model for biomolecular structure prediction, binder filtering, and controllable protein and nanobody design.

    Protein
    61Openness
  • Chai-3

    Chai DiscoveryJune 4, 2026antibodyantibody_designdrug_discovery+4

    Generative foundation model for antibody and multispecific design, doubling its predecessor's experimental success rate on therapeutic targets.

    Protein
    4Openness
  • Institute for Protein Design +1 otherJune 4, 2026de_novo_designdiffusiongenerative+3

    Diffusion-based backbone generation and sequence design method for programmable asymmetric transmembrane beta-barrel nanopores.

    Protein
    17Openness
  • AMix-2

    Shanghai AI Laboratory +4 othersMay 30, 2026diffusionfold_classificationfoundation_model+6

    Protein-text foundation model placing amino acid sequences and natural language in one token space for protein understanding and de novo design.

    ProteinLanguage model
    10Openness
  • ESMC

    2.9K102.1M
    BiohubMay 27, 2026foundation_modelmasked_language_modelingprotein_design+6

    Protein language model trained on roughly 2.8 billion sequences, forming the representation core of Biohub's world model of protein biology.

    Protein
    63Openness
  • ESMFold2

    2.9K10320.4K
    BiohubMay 27, 2026antibodybinder_designbiomolecular_complex+5

    Structure-prediction and design engine that turns ESMC sequence representations into all-atom 3D structures of proteins and biomolecular complexes.

    Protein
    61Openness
  • Griffith University +2 othersMay 21, 2026flow_matchinggenerative_modelprotein_design+5

    Dirichlet flow-matching model for protein design that generates family-aware sequences from ancestral-reconstruction priors, not random noise.

    Protein
    64Openness
  • TD3B

    2
    Duke UniversityMay 15, 2026de_novo_designdiffusionfine_tuning+4

    Sequence-based discrete-diffusion framework that designs peptide binders with specified agonist or antagonist behavior against GPCR targets.

    Protein
    10Openness
  • ProtLiD

    6
    National University of SingaporeMay 15, 2026de_novo_designdiffusiongenerative+6

    370M-parameter ligand-conditioned discrete diffusion model that co-designs protein sequence and structure under explicit small-molecule constraints.

    Protein
    5Openness
  • RedNet

    4
    Toyota Technological Institute at ChicagoMay 13, 2026generativegraph_neural_networkinverse_folding+3

    Multiscale graph neural network for fixed-backbone protein binder sequence design with a contrastive decoding algorithm to improve target selectivity.

    Protein
    83Openness
  • MuseDrift

    University of Florida +1 otherMay 12, 2026de_novo_designdiffusiongenerative+3

    Conditional discrete diffusion model for protein variant generation, with a calibrated identity dial controlling drift from a wild-type sequence.

    Protein
    12Openness
  • PTM-dCN

    Shanghai Jiao Tong UniversityMay 11, 2026de_novo_designdiffusiongenerative+3

    Latent diffusion model for PTM-aware protein sequence design, using ControlNet-style conditioning to steer generation toward chosen PTM sites.

    Protein
    10Openness
  • MochiDiff

    University of Washington +1 otherMay 7, 2026antibodyantibody_designde_novo_design+6

    Discrete diffusion model for conditional antibody sequence design with germline-absorbing noising that focuses learning on somatic variation.

    Protein
    8Openness
  • A-CODE

    University of Illinois Urbana-Champaign +1 otherMay 5, 2026binder_designde_novo_designdiffusion+4

    All-atom protein co-design model that generates sequence and structure together in one unified diffusion process, aimed at hard binder design.

    Protein
    8Openness
  • University of Naples Federico II +1 otherMay 5, 2026de_novo_designgenerativeprotein_design+2

    Three fixed ProtGPT2 fine-tunes specialized for metalloprotein generation, trained on ProteinMPNN-derived synthetic sequences.

    Protein
    38Openness
  • Proteo-R1

    6453.2K
    Stanford University +3 othersMay 1, 2026antibodyde_novo_designdiffusion+5

    Reasoning-guided foundation model for de novo antibody CDR design, pairing a multimodal LLM understanding expert with a Boltz-1 diffusion expert.

    Protein
    53Openness