All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 1–24 of 111 filtered models
GPFlow
———Variable-length generative protein design across structure, sequence, motif scaffolding, and peptide co-design via a generalized Poisson flow.
Protein18OpennessIgGM2
———All-atom foundation model for immune-receptor design that predicts structures and co-designs CDR sequences for antibodies, nanobodies, and TCRs.
Protein32OpennessBioMatrix
41—167Decoder-only foundation model that unifies sequences, 3D structures, and natural language for small molecules and proteins in one shared token space.
ProteinSmall moleculeLanguage model67OpennessBoltzProt-1
4.1K——De novo protein binder and nanobody design pipeline that ranks candidates by a protein-protein interaction model rather than structural confidence.
Protein11OpennessTCRDiff
7——Conditional denoising diffusion model that designs antigen-specific TCR CDR3β sequences conditioned on peptide-MHC targets and germline V-genes.
Protein75OpennessMoE-Bind
2——Protein binder generator producing receptor-conditioned binders from sequence alone, using a sparse Mixture-of-Experts transformer with no 3D input.
Protein54OpennessGermRL
1—4Reinforcement learning framework that fine-tunes the ProGen2-OAS antibody language model with GRPO to cut germline bias in generated sequences.
Protein65OpennessHBDesigner
16——Message-passing neural network that designs buried hydrogen-bond networks onto protein backbones, combining learned placement with PyRosetta scoring.
Protein60OpennessChai-3
———Generative foundation model for antibody and multispecific design, doubling its predecessor's experimental success rate on therapeutic targets.
Protein4OpennessDiffusion-based backbone generation and sequence design method for programmable asymmetric transmembrane beta-barrel nanopores.
Protein17OpennessAMix-2
———Protein-text foundation model placing amino acid sequences and natural language in one token space for protein understanding and de novo design.
ProteinLanguage model10OpennessLineageFlow
3——Dirichlet flow-matching model for protein design that generates family-aware sequences from ancestral-reconstruction priors, not random noise.
Protein64OpennessTD3B
—2—Sequence-based discrete-diffusion framework that designs peptide binders with specified agonist or antagonist behavior against GPCR targets.
Protein10OpennessProtLiD
6——370M-parameter ligand-conditioned discrete diffusion model that co-designs protein sequence and structure under explicit small-molecule constraints.
Protein5OpennessRedNet
4——Toyota Technological Institute at ChicagoMay 13, 2026generativegraph_neural_networkinverse_folding+3Multiscale graph neural network for fixed-backbone protein binder sequence design with a contrastive decoding algorithm to improve target selectivity.
Protein83OpennessMuseDrift
———Conditional discrete diffusion model for protein variant generation, with a calibrated identity dial controlling drift from a wild-type sequence.
Protein12OpennessPTM-dCN
———Latent diffusion model for PTM-aware protein sequence design, using ControlNet-style conditioning to steer generation toward chosen PTM sites.
Protein10OpennessMochiDiff
———Discrete diffusion model for conditional antibody sequence design with germline-absorbing noising that focuses learning on somatic variation.
Protein8OpennessA-CODE
———All-atom protein co-design model that generates sequence and structure together in one unified diffusion process, aimed at hard binder design.
Protein8Opennesssm_protgpt2
——7Three fixed ProtGPT2 fine-tunes specialized for metalloprotein generation, trained on ProteinMPNN-derived synthetic sequences.
Protein38OpennessProteo-R1
6453.2KReasoning-guided foundation model for de novo antibody CDR design, pairing a multimodal LLM understanding expert with a Boltz-1 diffusion expert.
Protein53Openness