All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 625–648 of 943 models
TITAN
356—134.7KSlide-level pathology foundation model turning whole-slide images into reusable embeddings for classification, retrieval, and report generation.
Pathology21OpennessUltraSam
13632—Promptable ultrasound image segmentation foundation model, a SAM adaptation trained on US-43d, the largest public ultrasound segmentation corpus.
Imaging26OpennessSCimilarity
2576—Single-cell foundation model trained by metric learning to embed scRNA-seq profiles for cell type annotation and similarity search in cell atlases.
Single-cell78OpennessSeqProFT
24—LoRA fine-tuning framework for ESM-2 with multi-head attention pooling and contact map enhancement for sequence-only protein property prediction.
Protein13OpennessBiomedParse
68516722.6KBiomedical imaging foundation model that segments, detects, and recognizes structures across nine modalities from natural language prompts.
Imaging60OpennessAnyECG
45—Zhejiang University +3 othersNovember 17, 2024anomaly_detectionarrhythmia_classificationelectrocardiogram+6ECG foundation model that learns discrete rhythm tokens from noisy real-world recordings for arrhythmia classification and anomaly detection.
Biosignals10OpennessEvo
1.5K2461.3KGenomic foundation model with 7B parameters that models prokaryotic DNA, RNA, and protein at single-nucleotide resolution over a 131k-token context.
DNA & Gene70OpennessLOL-EVE
2710Conditional autoregressive genomic language model trained on 13.6M mammalian promoters, scoring promoter variants, including indels, zero-shot.
DNA & Gene89OpennessOpenPhenom-S/16
78—7.9KCell Painting microscopy foundation model, a channel-agnostic masked autoencoder producing morphological embeddings for zero-shot phenotypic analysis.
Imaging26OpennessNatureLM-audio
99—1.7KAudio-language foundation model for bioacoustics that answers natural-language questions about animal sounds, with zero-shot species classification.
BiosignalsLanguage model61Opennessp-IgGen
1347Oxford Protein Informatics Group (OPIG) +1 otherNovember 9, 2024antibodyde_novo_designfoundation_model+5Antibody language model that generates paired heavy and light variable domains, with a developability-conditioned variant for manufacturable designs.
Protein68OpennessCryo-IEF
73——Cryo-EM foundation model pre-trained on 65 million particle images, enabling zero-shot classification, pose clustering, and quality assessment.
Imaging42OpennessDeepCell Types
910—Cell phenotyping model for spatial proteomics using a language-informed vision transformer to classify cell types zero-shot across marker panels.
ImagingSpatial omics33OpennessBC-Design
223—Biochemistry-aware inverse folding model that augments backbone geometry with physicochemical point clouds, reaching ~90% sequence recovery on CATH.
Protein75OpennessSFM-Protein
—3—Protein language model that captures short- and long-range residue co-evolution through a dual pre-training objective, at 3B parameters.
Protein10OpennessSpark3D (S3D)
157—30Masked-autoencoder foundation model that pre-trains a 3D Residual Encoder U-Net on roughly 39,000 brain MRIs for volumetric image segmentation.
Imaging45OpennessscGenePT
3113—Single-cell perturbation prediction model that adds gene-level language embeddings from NCBI, UniProt, and Gene Ontology to scGPT representations.
Single-cell90OpennessMAMMAL
11881KMulti-modal, multi-task biological foundation model trained on 2 billion samples spanning proteins, small molecules, and single-cell gene expression.
ProteinSmall moleculeSingle-cell74OpennessSleepGPT
223—Language model over whole-night sleep stage sequences that corrects automated sleep staging and supplies features for sleep disorder diagnosis.
Biosignals51Openness