All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 601624 of 943 models

  • Borzoi

    254251
    Calico Life SciencesJanuary 9, 2025cnngene_expressionregulatory_genomics+5

    Regulatory genomics model predicting cell-type-specific RNA-seq coverage from DNA sequence, unifying transcription, splicing, and polyadenylation.

    DNA & Gene
    92Openness
  • MUSK

    239
    Stanford University +1 otherJanuary 8, 2025cross_modal_retrievalfoundation_modelhistology+9

    Vision-language foundation model for precision oncology, pretrained on 50M pathology images and 1B text tokens via unified masked modeling.

    PathologyLanguage model
    12Openness
  • Evolla

    69238
    Westlake UniversityJanuary 6, 2025foundation_modellanguage_modelmultimodal+2

    Multimodal 80B-parameter protein-language model that answers natural language questions about protein function from sequence and structure.

    Protein
    67Openness
  • ProteinDT

    107106
    UC BerkeleyJanuary 1, 2025contrastive_learningdrug_discoveryfoundation_model+1

    Text-guided protein design framework aligning language with sequences for text-conditioned generation, zero-shot editing, and property prediction.

    Protein
    52Openness
  • CryoLens

    19
    Chan Zuckerberg InitiativeJanuary 1, 2025cnncryo_etgenerative+6

    Variational autoencoder that learns interpretable representations of protein subtomograms from cryo-ET, trained on 5.8 million synthetic particles.

    Imaging
    74Openness
  • SABER

    18
    Chan Zuckerberg InitiativeJanuary 1, 2025cryo_etfoundation_modelsegmentation+3

    Cryo-ET segmentation framework adapting SAM2 to vesicles and membrane-bound compartments in tomograms and 2D micrographs, zero-shot or fine-tuned.

    Imaging
    78Openness
  • Octopi

    12
    Chan Zuckerberg InitiativeJanuary 1, 2025cnncryo_etparticle_picking+3

    Cryo-ET particle picking model that localizes and classifies multiple protein complexes in a tomogram with a single 3D U-Net forward pass.

    Imaging
    81Openness
  • ECGFM-KED

    4352
    Shanghai Jiao Tong UniversityDecember 18, 2024cardiologycnncontrastive_learning+7

    Knowledge-enhanced ECG foundation model aligning a ResNet encoder with LLM-generated disease descriptions for zero- and few-shot interpretation.

    Biosignals
    30Openness
  • AppleDecember 15, 2024activity_recognitionbiomarker_predictioncardiovascular_health+6

    Wearable accelerometry foundation model distilled from a PPG encoder, predicting cardiovascular and health biomarkers from motion signals alone.

    Biosignals
    5Openness
  • WaveOrder

    45
    Chan Zuckerberg InitiativeDecember 13, 2024cnnfluorescence_microscopyimage_restoration+2

    Differentiable wave-optical framework for computational microscopy, recovering biomolecular density and orientation across label-free modalities.

    Imaging
    100Openness
  • ppLM-CO

    2
    University of AlbertaDecember 12, 2024codon_optimizationgenerativelanguage_model+4

    Codon optimization framework that adds a generative head to a frozen ProtBert protein language model to design highly expressed coding sequences.

    RNAProtein
    12Openness
  • MedPLIB

    1331.4K13
    Baidu +3 othersDecember 12, 2024histologymedical_image_groundingmixture_of_experts+8

    Biomedical multimodal LLM that answers questions about medical images and returns pixel-level segmentation masks, using a mixture-of-experts design.

    ImagingLanguage model
    80Openness
  • NormWear

    5822117
    University of California, San DiegoDecember 12, 2024disease_risk_predictionfoundation_modelmultimodal+5

    Multimodal foundation model for wearable physiological sensing across PPG, ECG, EEG, GSR, and IMU signals, using channel-aware attention.

    Biosignals
    77Openness
  • ProCyon

    6013
    Harvard Medical School +1 otherDecember 11, 2024drug_discoveryfoundation_modelmultimodal+6

    Multimodal foundation model integrating protein sequence, structure, and natural language to model and generate protein phenotypes across scales.

    ProteinLanguage modelSmall molecule
    83Openness
  • BiMediX2

    742048
    Mohamed bin Zayed University of Artificial IntelligenceDecember 10, 2024histologyinstruction_tuninglanguage_model+7

    Bilingual Arabic-English medical multimodal model built on Llama 3.1 for radiology, CT, and histology image understanding and question answering.

    Language modelImagingPathology
    11Openness
  • CBraMod

    329183
    Zhejiang UniversityDecember 10, 2024brain_computer_interfaceeegeeg_decoding+4

    EEG foundation model for brain-computer interface decoding, factorizing self-attention into parallel spatial and temporal branches.

    Biosignals
    78Openness
  • SubCell

    612
    Chan Zuckerberg Initiative +2 othersDecember 8, 2024cell_biologyfluorescence_microscopyfoundation_model+3

    Vision transformers trained on Human Protein Atlas fluorescence microscopy for subcellular protein localization and cell morphology representation.

    Imaging
    84Openness
  • BioEmu-1

    852335
    MicrosoftDecember 5, 2024conformational_ensemblefoundation_modelgenerative+3

    Generative model that emulates protein equilibrium ensembles, sampling cryptic pockets and unfolded states far faster than molecular dynamics.

    Protein
    71Openness
  • BME-X

    6872
    University of North Carolina at Chapel HillDecember 5, 2024cnndenoisingfoundation_model+5

    Tissue-aware foundation model that restores brain MRI quality across motion correction, super-resolution, denoising, and harmonization.

    Imaging
    70Openness
  • PLAID

    12714
    UC Berkeley +1 otherDecember 2, 2024de_novo_designdiffusiongenerative+4

    Latent diffusion model for controllable all-atom protein generation that co-designs sequence and structure while training on sequences alone.

    Protein
    77Openness
  • BrainIAC

    13825
    Mass General Brigham +4 othersDecember 2, 2024brain_age_predictionbrain_mricontrastive_learning+7

    Self-supervised vision foundation model for structural brain MRI, providing a reusable encoder for brain age, survival, and image classification.

    Imaging
    24Openness
  • AIDO.DNA

    1681738
    genbio.aiDecember 1, 2024bertdnafoundation_model+7

    DNA foundation model scaling an encoder-only transformer to 7 billion parameters for variant effect prediction, gene expression, and sequence design.

    DNA & Gene
    27Openness
  • ESM Cambrian

    2.9K1.6K
    EvolutionaryScaleDecember 1, 2024foundation_modelrepresentation_learningtransformer

    Protein language model family at 300M, 600M, and 6B parameters, purpose-built for representation learning and outperforming ESM-2 at smaller scale.

    Protein
    16Openness
  • genbio.aiNovember 29, 2024foundation_modellanguage_modelmixture_of_experts+6

    Mixture-of-experts protein language model scaling to 16 billion parameters, applied to variant effect prediction and de novo protein design.

    Protein
    29Openness