All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 649672 of 943 models

  • SS-CXR

    13
    Children's National Hospital +2 othersOctober 27, 2024disease_classificationfoundation_modelradiology+3

    Self-supervised vision transformer pretrained on chest X-rays to produce a domain-specific foundation model for classification and lung segmentation.

    Imaging
    22Openness
  • PaPaGei

    1722
    Nokia Bell LabsOctober 27, 2024bias_evaluationcardiovascular_healthcnn+5

    Open foundation model for photoplethysmography (PPG), learning morphology-aware waveform representations for cardiovascular and wearable health tasks.

    Biosignals
    67Openness
  • IBM ResearchOctober 25, 2024drug_discoveryfoundation_modelgraph_neural_network+5

    Molecular foundation model that late-fuses graph, image, and SMILES encoders into one embedding for molecular property and drug target prediction.

    Small molecule
    77Openness
  • MedRegA

    4625113
    Hong Kong University of Science and Technology +1 otherOctober 24, 2024histologyimage_classificationinstruction_tuning+8

    Region-aware bilingual medical multimodal LLM that handles image- and region-level vision-language tasks across eight imaging modalities.

    PathologyLanguage model
    65Openness
  • Birkbeck, University of LondonOctober 22, 2024autoregressive_modelgenerativeguided_generation+6

    Autoregressive temporal convolutional network for synthetic yeast promoter design, trained with guidance from a sequence-to-expression predictor.

    DNA & Gene
    5Openness
  • PULSE

    66452K
    The Ohio State University +1 otherOctober 21, 2024cardiologyecgecg_interpretation+6

    Multimodal large language model that interprets 12-lead electrocardiogram images, answering open-ended clinical questions and generating ECG reports.

    BiosignalsImaging
    84Openness
  • CELL-Diff

    7
    Chan Zuckerberg InitiativeOctober 18, 2024cell_biologyde_novo_designdiffusion+7

    Diffusion model translating in both directions between protein sequences and fluorescence microscopy images to predict subcellular localization.

    Imaging
    87Openness
  • PSALM

    Harvard University +1 otherOctober 17, 2024language_modelproteomicstransfer_learning+1

    Protein domain annotation model pairing an ESM-2 backbone with a probabilistic decoder, bringing language-model sensitivity to Pfam-style assignment.

    Protein
    91Openness
  • Google ResearchOctober 17, 2024activity_recognitionfoundation_modelgenerative_modeling+5

    Wearable sensor foundation model pretrained on heart rate, accelerometer, skin temperature and other channels for activity recognition and imputation.

    Biosignals
    7Openness
  • DynaCLR

    1023
    Chan Zuckerberg InitiativeOctober 15, 2024cell_biologycell_state_classificationcnn+5

    Self-supervised contrastive model embedding cell and organelle dynamics from time-lapse microscopy for cell-state analysis without manual labels.

    Imaging
    71Openness
  • gCIS

    109
    United Imaging Intelligence +1 otherOctober 14, 2024ct_imagingfoundation_modellesion_detection+4

    CT segmentation foundation model that uses task prompts to segment 83 anatomical structures and lesions across whole-body scans in a single network.

    Imaging
    14Openness
  • Orthrus

    128394
    Bowang LabOctober 12, 2024contrastive_learningfoundation_modelrna_structure+1

    Mamba-based mature RNA foundation model, contrastively trained on splice isoforms and 400+ mammalian species orthologs for mRNA property prediction.

    RNA
    71Openness
  • CryoFM

    35720
    ByteDance SeedOctober 11, 2024cryo_emdensity_mapsflow_matching+3

    Generative foundation model for cryo-EM density maps using flow matching, enabling zero-shot denoising, map sharpening, and missing wedge restoration.

    Imaging
    77Openness
  • Eko HealthOctober 11, 2024disease_detectionecgfoundation_model+5

    Masked-autoencoder foundation model pretrained on digital-stethoscope heart sounds and single-lead ECG for cardiovascular disease detection.

    Biosignals
    22Openness
  • Chai-1

    2K394
    Chai DiscoveryOctober 11, 2024diffusiondrug_discoveryfoundation_model+2

    Biomolecular structure prediction foundation model covering proteins, small molecules, DNA, RNA, and glycans in a single diffusion framework.

    Protein
    49Openness
  • Columbia UniversityOctober 11, 2024language_modelprotein_dynamicsrepresentation_learning+4

    Protein language models trained on biophysical dynamics from MD simulations and normal-mode analysis; ESMDance builds on ESM2 for variant effects.

    Protein
    84Openness
  • GeneCompass

    119137
    Chinese Academy of SciencesOctober 8, 2024cross_speciesfoundation_modelregulatory_genomics+1

    Knowledge-informed cross-species foundation model pre-trained on 101 million human and mouse single-cell transcriptomes to decipher gene regulation.

    Single-cell
    32Openness
  • ECGFounder

    13934109
    Peking University +2 othersOctober 5, 2024arrhythmia_detectioncardiologycnn+6

    Convolutional ECG foundation model trained on expert annotations spanning 150 diagnostic categories, with 12-lead and single-lead wearable variants.

    Biosignals
    75Openness
  • D-BETA

    3613119
    Singapore Management University +1 otherOctober 3, 2024autoencodercontrastive_learningecg_classification+6

    ECG foundation model pretrained on 12-lead waveforms paired with clinical reports, enabling label-efficient and zero-shot cardiac diagnosis.

    BiosignalsLanguage model
    27Openness
  • ECG-JEPA

    1616
    Zuse Institute Berlin +1 otherOctober 2, 2024ecg_classificationelectrocardiogramfoundation_model+4

    Joint-embedding predictive foundation model pretrained on over a million unlabeled ECGs, learning transferable 12-lead representations for diagnosis.

    Biosignals
    62Openness
  • GenerRNA

    1945
    Preferred NetworksOctober 1, 2024de_novo_designfoundation_modelgenerative

    Transformer-based generative language model for de novo RNA design, pretrained on 16 million non-coding RNA sequences from RNAcentral.

    RNA
    75Openness
  • Brain-JEPA

    17479
    National University of SingaporeSeptember 28, 2024brain_dynamicsdisease_diagnosisfmri+5

    Brain-dynamics foundation model for resting-state fMRI, adapting the Joint-Embedding Predictive Architecture with brain gradient positioning.

    BiosignalsImaging
    18Openness
  • DFMDock

    557
    Johns Hopkins UniversitySeptember 27, 2024contrastive_learningdiffusiongenerative+3

    Diffusion model for protein-protein docking that unifies pose sampling and energy-based ranking, works without MSAs, and generalizes to new targets.

    Protein
    81Openness
  • TUMSyn

    45
    ShanghaiTech University +2 othersSeptember 25, 2024cnncontrastive_learningfoundation_model+6

    Text-guided MRI synthesis model that generates brain MR sequences and resolutions on demand from routine scans using imaging-metadata prompts.

    Imaging
    28Openness