All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 649–672 of 943 models
SS-CXR
—13—Children's National Hospital +2 othersOctober 27, 2024disease_classificationfoundation_modelradiology+3Self-supervised vision transformer pretrained on chest X-rays to produce a domain-specific foundation model for classification and lung segmentation.
Imaging22OpennessPaPaGei
1722—Open foundation model for photoplethysmography (PPG), learning morphology-aware waveform representations for cardiovascular and wearable health tasks.
Biosignals67OpennessBioMed Multi-View
467584Molecular foundation model that late-fuses graph, image, and SMILES encoders into one embedding for molecular property and drug target prediction.
Small molecule77OpennessMedRegA
4625113Hong Kong University of Science and Technology +1 otherOctober 24, 2024histologyimage_classificationinstruction_tuning+8Region-aware bilingual medical multimodal LLM that handles image- and region-level vision-language tasks across eight imaging modalities.
PathologyLanguage model65OpennessGen-DNA-TCN
—2—Autoregressive temporal convolutional network for synthetic yeast promoter design, trained with guidance from a sequence-to-expression predictor.
DNA & Gene5OpennessPULSE
66452KMultimodal large language model that interprets 12-lead electrocardiogram images, answering open-ended clinical questions and generating ECG reports.
BiosignalsImaging84OpennessCELL-Diff
7——Diffusion model translating in both directions between protein sequences and fluorescence microscopy images to predict subcellular localization.
Imaging87OpennessPSALM
———Protein domain annotation model pairing an ESM-2 backbone with a probabilistic decoder, bringing language-model sensitivity to Pfam-style assignment.
Protein91OpennessWearable sensor foundation model pretrained on heart rate, accelerometer, skin temperature and other channels for activity recognition and imputation.
Biosignals7OpennessDynaCLR
1023—Self-supervised contrastive model embedding cell and organelle dynamics from time-lapse microscopy for cell-state analysis without manual labels.
Imaging71OpennessgCIS
109—CT segmentation foundation model that uses task prompts to segment 83 anatomical structures and lesions across whole-body scans in a single network.
Imaging14OpennessOrthrus
128—394Mamba-based mature RNA foundation model, contrastively trained on splice isoforms and 400+ mammalian species orthologs for mRNA property prediction.
RNA71OpennessCryoFM
35720Generative foundation model for cryo-EM density maps using flow matching, enabling zero-shot denoising, map sharpening, and missing wedge restoration.
Imaging77OpennessMasked-autoencoder foundation model pretrained on digital-stethoscope heart sounds and single-lead ECG for cardiovascular disease detection.
Biosignals22OpennessChai-1
2K394—Biomolecular structure prediction foundation model covering proteins, small molecules, DNA, RNA, and glycans in a single diffusion framework.
Protein49OpennessSeqDance / ESMDance
60—72Protein language models trained on biophysical dynamics from MD simulations and normal-mode analysis; ESMDance builds on ESM2 for variant effects.
Protein84OpennessGeneCompass
119137—Knowledge-informed cross-species foundation model pre-trained on 101 million human and mouse single-cell transcriptomes to decipher gene regulation.
Single-cell32OpennessECGFounder
13934109Convolutional ECG foundation model trained on expert annotations spanning 150 diagnostic categories, with 12-lead and single-lead wearable variants.
Biosignals75OpennessD-BETA
3613119Singapore Management University +1 otherOctober 3, 2024autoencodercontrastive_learningecg_classification+6ECG foundation model pretrained on 12-lead waveforms paired with clinical reports, enabling label-efficient and zero-shot cardiac diagnosis.
BiosignalsLanguage model27OpennessECG-JEPA
1616—Joint-embedding predictive foundation model pretrained on over a million unlabeled ECGs, learning transferable 12-lead representations for diagnosis.
Biosignals62OpennessGenerRNA
1945—Transformer-based generative language model for de novo RNA design, pretrained on 16 million non-coding RNA sequences from RNAcentral.
RNA75OpennessBrain-JEPA
17479—Brain-dynamics foundation model for resting-state fMRI, adapting the Joint-Embedding Predictive Architecture with brain gradient positioning.
BiosignalsImaging18OpennessDFMDock
557—Diffusion model for protein-protein docking that unifies pose sampling and energy-based ranking, works without MSAs, and generalizes to new targets.
Protein81OpennessTUMSyn
45——Text-guided MRI synthesis model that generates brain MR sequences and resolutions on demand from routine scans using imaging-metadata prompts.
Imaging28Openness