Academic

Carnegie Mellon University

Private research university

Location: Pittsburgh, PA
Website
8 models(3 Imaging, 2 Biosignals, 2 DNA & Gene, 1 RNA, 1 Protein, 1 Small molecule)

Labs & Groups (1)

Models (8)

seq2ribo

Carnegie Mellon University

Released April 3, 2026

18

A hybrid simulation and machine-learning framework that predicts ribosome location profiles from mRNA sequence alone, combining a structure-aware TASEP with a Mamba polisher.

RNA

EnzyGen2

Carnegie Mellon University

Released March 31, 2026

30

A 730M-parameter protein foundation model that co-designs enzyme sequence and 3D structure under small-molecule ligand guidance for de novo enzyme design.

ProteinSmall molecule

EEG Foundation Model for BCI

Carnegie Mellon University

Released March 27, 2026

EEG foundation model pretrained by spectrogram reconstruction that improves online directional motor-imagery brain-computer interface control.

Biosignals

dnaHNet

Arc Institute / Carnegie Mellon University / University of Toronto

Released February 11, 2026

1

A tokenizer-free, hierarchical autoregressive genomic foundation model that adaptively chunks raw nucleotides, enabling efficient long-context learning and zero-shot variant and gene predictions.

DNA & Gene

PULSE

The Ohio State University / Carnegie Mellon University

Released October 21, 2024

271K64

A multimodal LLM fine-tuned to interpret electrocardiogram images, trained on the >1M-sample ECGInstruct dataset and evaluated on the ECGBench benchmark.

BiosignalsImaging

CryoSAM

Xu Lab

Released July 9, 2024

6156

Training-free cryo-ET tomogram segmentation that adapts SAM and DINOv2 for 3D volumetric data, enabling full tomogram segmentation from a single user prompt.

Imaging

MoTT

Carnegie Mellon University

Released July 22, 2023

713

A transformer-based single particle tracker for fluorescence microscopy that uses multi-hypothesis attention and position-based relinking to handle low SNR and high particle density.

Imaging

GeneBERT

Carnegie Mellon University

Released October 11, 2021

27

Multi-modal self-supervised model pre-trained on regulatory genome sequences and transcription factor binding matrices for cell-type-specific regulatory prediction.

DNA & Gene