All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 553576 of 943 models

  • Pinal

    94299
    Westlake UniversityApril 2, 2025foundation_modellanguage_modelprotein_design+1

    De novo protein design from natural language: a 16B-parameter framework turning text descriptions into sequences via structure-conditioned generation.

    Protein
    42Openness
  • GMAI-VL-R1

    19
    Shanghai AI Laboratory +6 othersApril 2, 2025histologylanguage_modelmedical_image_diagnosis+7

    General medical vision-language model trained with reinforcement learning to reason step by step over medical images for diagnosis and visual QA.

    ImagingLanguage model
    17Openness
  • HGFM

    Tsinghua University +2 othersApril 1, 2025brain_connectivitydisease_classificationfew_shot+6

    Hypergraph foundation model for brain disease diagnosis from resting-state fMRI, self-supervised on high-order connectivity among brain regions.

    BiosignalsImaging
    10Openness
  • BioFM

    6
    M42March 27, 2025dnafoundation_modelgene_expression+5

    265M-parameter genomic foundation model whose BioToken scheme folds variants and region annotations into the tokens for variant effect prediction.

    DNA & Gene
    4Openness
  • TxGemma

    2361.8K
    Google DeepMind +1 otherMarch 25, 2025drug_discoveryfoundation_modelinstruction_tuning+2

    Open therapeutics foundation models from Google, built on Gemma-2, for drug-discovery property prediction and conversational reasoning.

    Language modelSmall molecule
    58Openness
  • Dyna-1

    801316
    Scripps ResearchMarch 19, 2025dynamics_predictionfoundation_modelnmr+2

    Protein dynamics model predicting per-residue probability of microsecond-millisecond conformational exchange from sequence or structure.

    Protein
    79Openness
  • Med-R1

    128681
    Emory University +4 othersMarch 18, 2025disease_diagnosisgenerativehistology+7

    Medical vision-language model trained with reinforcement learning for generalizable reasoning across eight imaging modalities and five question types.

    ImagingLanguage model
    45Openness
  • seqLens

    7
    George Washington UniversityMarch 12, 2025bertfoundation_modelgenomics+7

    Genomic language models with disentangled attention, pretrained on prokaryotic and eukaryotic genomes for sequence classification and variant effects.

    DNA & Gene
    18Openness
  • BEPH

    7796
    Shanghai Jiao Tong UniversityMarch 10, 2025cancer_diagnosiscancer_subtypingfoundation_model+7

    Histopathology foundation model pretrained with BEiT masked image modeling on 11M+ tissue image tiles for cancer diagnosis and survival prediction.

    Pathology
    73Openness
  • National University of Singapore +1 otherMarch 8, 2025cardiologyclinical_reasoningdiagnosis_grounding+7

    Multimodal LLM unifying 12-lead ECG time series, ECG images, and text for grounded, clinician-aligned electrocardiogram interpretation.

    BiosignalsLanguage model
    79Openness
  • FoldMatch

    11
    RCSB Protein Data Bank +1 otherMarch 6, 2025embeddingsrepresentation_learningstructural_biology+2

    Protein structure embedding model that compresses each 3D fold into a single fixed-length vector for proteome-wide similarity search and clustering.

    Protein
    23Openness
  • TEDDY

    9
    Merck & Co.March 5, 2025cell_type_annotationdisease_classificationfoundation_model+3

    Single-cell RNA-seq foundation models combining masked modeling with ontology supervision to classify cell states across unseen donors and diseases.

    Single-cell
    46Openness
  • Tera-MIND

    1
    University of Zurich +1 otherMarch 3, 2025conditional_generationdiffusiongenerative+3

    Patch-based 3D diffusion model that generates teravoxel-scale virtual mouse brain volumes conditioned on spatially resolved gene expression.

    Spatial omicsImaging
    78Openness
  • LigandMPNN

    605
    Institute for Protein DesignMarch 1, 2025enzyme_designgraph_neural_networkligand_binding+2

    Protein sequence design model that represents small molecules, nucleotides, and metals at atomic resolution, enabling ligand-aware enzyme design.

    Protein
    66Openness
  • Hunan Normal University +1 otherFebruary 27, 2025cnnfoundation_modelsegmentation+3

    Universal ultrasound segmentation foundation model adapting the Segment Anything Model to eight anatomical regions in a single promptable network.

    Imaging
    14Openness
  • Tsinghua UniversityFebruary 27, 2025cross_attentiondata_generationdiffusion+4

    Latent diffusion model for single-cell multi-omics generation and modality translation, with gradient-based inference of gene regulatory networks.

    Single-cell
    85Openness
  • MedVLM-R1

    321.1K
    Technical University of Munich +2 othersFebruary 26, 2025medical_reasoningmultimodalradiology+4

    2B-parameter medical vision-language model that uses reinforcement learning to show interpretable reasoning for radiology visual question answering.

    ImagingLanguage model
    83Openness
  • D-LMBmapX

    41
    MRC Laboratory of Molecular BiologyFebruary 25, 2025connectomicsfoundation_modelimage_registration+3

    Whole-brain axon and soma segmentation foundation model and registration pipeline for developmental connectomics, with no per-stage retraining.

    Imaging
    23Openness
  • Brain2Qwerty

    857
    Meta AI +1 otherFebruary 24, 2025brain_to_text_decodingcnneeg+3

    Brain-to-text decoder that reconstructs typed sentences from non-invasive MEG and EEG brain recordings using a CNN, transformer, and language model.

    Biosignals
    11Openness
  • Guangzhou Medical University +1 otherFebruary 23, 2025cell_type_annotationcross_attentiondna_methylation+5

    Single-cell DNA methylation foundation model capturing genome-wide CpG dependencies in whole-genome bisulfite sequencing across tissues and species.

    Single-cellDNA & Gene
    78Openness
  • SpatialEx

    37
    Jilin University +1 otherFebruary 23, 2025contrastive_learningfoundation_modelgene_expression_prediction+6

    Histology-anchored framework pairing an H&E foundation model with a cellular hypergraph to predict single-cell multi-omics from tissue images.

    Spatial omicsPathology
    57Openness
  • Evo 2

    4K28625.1K
    Arc InstituteFebruary 21, 2025dnafoundation_modelgenerative+2

    Genomic foundation model trained on 9.3 trillion DNA base pairs across all domains of life, with 40B parameters and a 1-million-token context.

    DNA & Gene
    92Openness
  • FetalCLIP

    7022
    Mohamed bin Zayed University of Artificial Intelligence +1 otherFebruary 20, 2025classificationcontrastive_learningfoundation_model+7

    Vision-language foundation model for fetal ultrasound, pretrained on 210,035 image-text pairs for plane classification, biometry, and segmentation.

    Imaging
    13Openness
  • LLaVA-Rad

    5893450
    Microsoft ResearchFebruary 20, 2025chest_x_rayfoundation_modelimage_text_retrieval+5

    Chest X-ray vision-language model that drafts the findings section of a radiology report, at 7B parameters small enough to run on a single GPU.

    ImagingLanguage model
    35Openness