All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 577600 of 943 models

  • Tahoe TherapeuticsFebruary 20, 2025autoencodercancerembeddings+6

    scVI variational autoencoder trained on the Tahoe-100M drug-perturbation atlas, giving a 10-dimensional embedding of treated cancer cell states.

    Single-cell
    93Openness
  • RIME

    Italian Institute of TechnologyFebruary 16, 2025embeddingsrnatransfer_learning+1

    RNA-RNA interaction prediction framework that scores pairing between long transcripts directly from sequence using Nucleotide Transformer embeddings.

    RNA
    14Openness
  • HeartLang

    563
    Peking UniversityFebruary 15, 2025arrhythmia_detectionecg_classificationelectrocardiogram+5

    ECG foundation model that treats heartbeats as words and rhythm strips as sentences, using heartbeat-level tokenization for diagnostic classification.

    Biosignals
    78Openness
  • HealthGPT

    1.6K3425
    Zhejiang University +4 othersFebruary 14, 2025histologyimage_reconstructionmedical_image_generation+7

    Medical vision-language model that unifies image comprehension and generation in one autoregressive transformer via heterogeneous LoRA adapters.

    PathologyImaging
    68Openness
  • NatureLM

    3218
    Microsoft Research AI for ScienceFebruary 11, 2025drug_discoveryfoundation_modelmaterials_science+2

    Unified science foundation model treating molecules, proteins, RNA, DNA, and materials as one sequence language, in 1B, 8B, and 46.7B sizes.

    Language modelSmall moleculeProtein
    27Openness
  • Rensselaer Polytechnic Institute +2 othersFebruary 11, 2025chest_ctdisease_classificationfoundation_model+7

    865M-parameter multimodal foundation model that fuses 3D low-dose chest CT with clinical data to answer 17 lung cancer screening questions.

    Imaging
    71Openness
  • KAIST +1 otherFebruary 7, 2025disease_diagnosisfmrifoundation_model+6

    Functional MRI foundation model that learns brain dynamics as a stochastic optimal control problem, self-supervised on 41,072 UK Biobank subjects.

    Biosignals
    8Openness
  • M3FM

    191.4K
    University of Oxford +6 othersFebruary 6, 2025chest_x_rayclipcontrastive_learning+9

    Multimodal medical imaging foundation model for zero-shot clinical diagnosis and report generation from chest X-ray and CT in English and Chinese.

    ImagingLanguage model
    60Openness
  • GenomeOcean

    150242.2K
    DOE Joint Genome Institute +6 othersFebruary 5, 2025de_novo_designfoundation_modelgenerative+6

    4B-parameter generative genome foundation model trained on assembled environmental metagenomes for microbial representation and de novo DNA design.

    DNA & Gene
    49Openness
  • ECG-LM

    42
    Tsinghua University +1 otherFebruary 4, 2025cardiologycardiovascular_disease_detectioncnn+6

    Multimodal ECG language model pairing a specialized signal encoder with a biomedical LLM for cardiovascular disease detection and question answering.

    BiosignalsLanguage model
    24Openness
  • FM-CT

    6213
    NYU Grossman School of MedicineFebruary 4, 2025disease_detectionfoundation_modelhead_ct+4

    Self-supervised 3D vision foundation model for non-contrast head CT, pretrained on 361,663 scans to detect a broad range of intracranial disease.

    Imaging
    26Openness
  • Pulse-PPG

    7282
    University of Memphis +1 otherFebruary 3, 2025cnncontrastive_learningfoundation_model+5

    Photoplethysmography foundation model pretrained on raw wearable signals from a field study, transferring across lab and field health tasks.

    Biosignals
    64Openness
  • Chan Zuckerberg InitiativeFebruary 1, 2025cnncryo_etparticle_picking+3

    Cryo-ET particle picking model that averages tiny, medium, and large 3D U-Nets pretrained on simulated tomograms and fine-tuned on experimental data.

    Imaging
    86Openness
  • Cellpose 3

    2.3K377
    HHMI Janelia Research CampusFebruary 1, 2025cell_biologygeneralist_modelimage_restoration+2

    Generalist cell segmentation pairing the cyto3 super-generalist model with one-click networks that denoise, deblur, and upsample microscopy images.

    Imaging
    65Openness
  • Chan Zuckerberg InitiativeFebruary 1, 2025cnncryo_etparticle_picking+3

    Cryo-ET particle picking ensemble of three 3D segmentation models predicting particle-center heatmaps with ResNet50d and EfficientNetV2-M backbones.

    Imaging
    95Openness
  • TopCUP

    3
    Chan Zuckerberg InitiativeFebruary 1, 2025cnncryo_etparticle_picking+3

    Cryo-ET particle picking model, an ensemble of 3D U-Nets with EfficientNet encoders that finds protein complexes in tomograms by heatmap segmentation.

    Imaging
    96Openness
  • BPD

    2
    Chan Zuckerberg InitiativeFebruary 1, 2025cnncryo_etparticle_picking+3

    Cryo-ET particle picking model that localizes six protein complexes in tomograms using an ensemble of lightweight 3D U-Nets.

    Imaging
    67Openness
  • MINIM

    15850
    Peking University +2 othersFebruary 1, 2025data_augmentationdiffusionfoundation_model+9

    Text-to-image diffusion model that generates synthetic medical images across imaging modalities and organs to augment scarce clinical training data.

    Imaging
    41Openness
  • SNPBag

    159
    Zhejiang LabJanuary 29, 2025embeddingsfoundation_modelgenomics+3

    Genomics foundation model for genome-scale SNP analysis, handling imputation, phasing, ancestry, and relatedness from one 0.8B-parameter checkpoint.

    DNA & Gene
    29Openness
  • TrASPr

    13
    University of PennsylvaniaJanuary 20, 2025splicingsplicing_predictiontransformer+1

    Multi-transformer model that predicts tissue-specific alternative splicing outcomes and generalizes zero-shot to unseen cellular conditions.

    RNA
    33Openness
  • EndoChat

    514417
    Chinese University of Hong Kong +5 othersJanuary 20, 2025endoscopygrounded_dialogueinstruction_tuning+6

    Grounded multimodal language model for endoscopic surgery, supporting visual dialogue, region-based question answering, and bounding-box grounding.

    ImagingLanguage model
    22Openness
  • MedicoSAM

    3150
    Computational Cell AnalyticsJanuary 20, 2025foundation_modelinteractive_annotationmedical_imaging+4

    Segment Anything Model finetuned on diverse medical images, giving a reusable promptable checkpoint for interactive and automatic image segmentation.

    Imaging
    77Openness
  • Protenix

    2K123
    ByteDance AI LabJanuary 11, 2025biomoleculardiffusionstructure_prediction

    Open-source PyTorch reproduction of AlphaFold 3 under Apache 2.0, matching or exceeding AF3 on protein-ligand, protein-protein, and RNA benchmarks.

    Protein
    76Openness
  • Brainfound

    4
    Tsinghua University +2 othersJanuary 10, 2025contrastive_learningcross_modality_translationdiffusion+9

    Multimodal vision-text foundation model for brain CT and MRI, pretrained on roughly 10 million image-report pairs to act as a clinical copilot.

    ImagingLanguage model
    7Openness