All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 529552 of 943 models

  • PhysioWave

    18813
    ETH Zurich +2 othersJune 12, 2025arrhythmia_detectionecgeeg+9

    Physiological signal foundation model for ECG, EMG, and EEG pairing learnable multi-scale wavelet decomposition with masked transformer pretraining.

    Biosignals
    80Openness
  • RocketSHP

    12157
    Flatiron InstituteJune 12, 2025dynamics_predictionmolecular_dynamicstransfer_learning+2

    Proteome-scale protein dynamics prediction from sequence or structure, predicting residue flexibility, correlations, and conformational states.

    Protein
    79Openness
  • NeuroSTORM

    1164
    Chinese University of Hong Kong +7 othersJune 11, 2025disease_diagnosisfmrifoundation_model+6

    Spatiotemporal foundation model that learns representations directly from 4D functional MRI volumes for disease diagnosis and phenotype prediction.

    ImagingBiosignals
    78Openness
  • SensorLM

    Google Research +2 othersJune 10, 2025activity_recognitioncontrastive_learningcross_modal_retrieval+6

    Sensor-language foundation models aligning wearable biosignals with text for zero-shot activity recognition, retrieval, and sensor captioning.

    BiosignalsLanguage model
    41Openness
  • Lingshu

    3147.9K
    DAMO Academy +1 otherJune 8, 2025clinical_reasoningfoundation_modelhistology+7

    Generalist medical multimodal LLM for image understanding, visual question answering, and report generation across twelve-plus imaging modalities.

    ImagingLanguage model
    70Openness
  • KRONOS

    2025561
    Mahmood Lab +8 othersJune 3, 2025cell_phenotypingfoundation_modelimage_retrieval+4

    Spatial proteomics foundation model, marker-aware and panel-agnostic, pretrained on 47 million multiplexed tissue-imaging patches from 175 markers.

    Spatial omicsPathology
    12Openness
  • Boltz-2

    4.1K481
    MIT CSAIL +1 otherJune 1, 2025binding_affinitydiffusiondrug_discovery+2

    Open model that jointly predicts biomolecular structure and small-molecule binding affinity, approaching FEP+ accuracy in seconds on a single GPU.

    Protein
    71Openness
  • IBM ResearchJune 1, 2025cell_type_annotationfoundation_modelgene_expression+6

    Open-source framework for building RNA and DNA foundation models, featuring WCED pretraining for transcriptomics and SNP-aware encoding for genomics.

    DNA & Gene
    84Openness
  • QoQ-Med

    52257126
    MITMay 31, 2025ecgfoundation_modelhistology+7

    Multimodal clinical foundation model reasoning jointly over 2D and 3D medical images, ECG time-series, and text reports across nine clinical domains.

    ImagingBiosignalsLanguage model
    74Openness
  • BioCLIP 2

    774247.7K
    Imageomics InstituteMay 29, 2025biodiversitycontrastive_learningfoundation_model+6

    Vision foundation model for the tree of life, trained on 214 million organism images across 952,000 taxa for zero-shot species classification.

    Imaging
    93Openness
  • DreaMS

    19269
    IOCB Prague +1 otherMay 23, 2025chemical_property_predictionfoundation_modelmass_spectrometry+7

    Self-supervised transformer pretrained on millions of tandem mass spectra, giving embeddings for spectral annotation and fingerprint prediction.

    MetabolomicsSmall molecule
    98Openness
  • BrainOmni

    7128
    Tsinghua University +3 othersMay 18, 2025brain_signal_classificationeegfoundation_model+7

    Brain foundation model unifying EEG and MEG in a single encoder via a shared discrete tokenizer that transfers across sensor layouts and montages.

    Biosignals
    80Openness
  • Cellpose-SAM

    2.3K186
    HHMI Janelia Research CampusMay 1, 2025cell_biologyfoundation_modelgeneralist_model+4

    Generalist cell segmentation model pairing SAM's ViT-L encoder with Cellpose flow fields, outperforming average human annotators on its benchmark.

    Imaging
    50Openness
  • University of Cambridge +1 otherMay 1, 2025brain_mrifoundation_modelhypergraph_neural_network+5

    Brain MRI segmentation foundation model trained on 66,000+ image-label pairs across 14 MRI sub-modalities, with a hypergraph dynamic adapter.

    Imaging
    26Openness
  • UniBiomed

    71103
    Hong Kong University of Science and Technology +2 othersApril 30, 2025foundation_modelhistologymultimodal+6

    Universal foundation model that jointly generates diagnostic text and segments the corresponding targets across ten biomedical imaging modalities.

    ImagingLanguage model
    64Openness
  • Chan Zuckerberg InitiativeApril 29, 2025cell_type_annotationcross_speciesdisease_prediction+6

    Generative single-cell foundation model trained on 112 million cells from 12 species, autoregressively modeling gene identities and expression counts.

    Single-cell
    67Openness
  • Shusi

    11
    Zhejiang UniversityApril 27, 2025cancerfoundation_modelgraph_neural_network+3

    Single-cell foundation model inferring context-specific protein-protein interactions from cancer transcriptomes via a variational graph autoencoder.

    Single-cellProtein
    20Openness
  • CodonFM

    8631
    NVIDIA +1 otherApril 25, 2025bertde_novo_designfoundation_model+7

    Codon-resolution language models trained on 130 million coding sequences from 20,000 species, learning codon rules for translation and mRNA stability.

    RNA
    72Openness
  • OmniEM

    4
    Peking UniversityApril 19, 2025electron_microscopyfoundation_modelsegmentation+2

    Unified electron microscopy image analysis toolkit built on EM-DINO, a vision foundation model pretrained on 5 million diverse EM images.

    Imaging
    4Openness
  • mLLMCelltype

    65210
    Texas A&M UniversityApril 17, 2025cell_type_annotationlanguage_model

    Multi-LLM consensus framework for automated cell type annotation in scRNA-seq data, outperforming prior methods by ~15% in mean accuracy.

    Single-cell
    37Openness
  • scPRINT

    15454
    Institut Pasteur +1 otherApril 16, 2025foundation_modelgene_network

    Single-cell foundation model pre-trained on 50 million cells that infers cell-specific gene regulatory networks from transformer attention matrices.

    Single-cell
    78Openness
  • ProGen3

    11353180
    ProfluentApril 16, 2025de_novo_designfoundation_modelgenerative+6

    Sparse mixture-of-experts autoregressive protein language model family pretrained on 1.5 trillion amino acid tokens with compute-optimal scaling.

    Protein
    33Openness
  • Swin-BOB

    5016
    University of OxfordApril 9, 2025foundation_modelmrisegmentation+3

    3D MRI organ segmentation foundation model built on Swin-UNETR and trained on the UKBOB whole-body dataset covering 72 organs and skeletal structures.

    Imaging
    64Openness
  • RAG-ESM

    2716
    EPFLApril 2, 2025de_novo_designgenerativemotif_scaffolding+5

    Retrieval-augmented protein language model that conditions ESM-2 on homologous sequences via cross-attention for conditional sequence generation.

    Protein
    90Openness