All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 529–552 of 943 models
PhysioWave
18813—Physiological signal foundation model for ECG, EMG, and EEG pairing learnable multi-scale wavelet decomposition with masked transformer pretraining.
Biosignals80OpennessRocketSHP
12157—Proteome-scale protein dynamics prediction from sequence or structure, predicting residue flexibility, correlations, and conformational states.
Protein79OpennessNeuroSTORM
1164—Spatiotemporal foundation model that learns representations directly from 4D functional MRI volumes for disease diagnosis and phenotype prediction.
ImagingBiosignals78OpennessSensorLM
———Google Research +2 othersJune 10, 2025activity_recognitioncontrastive_learningcross_modal_retrieval+6Sensor-language foundation models aligning wearable biosignals with text for zero-shot activity recognition, retrieval, and sensor captioning.
BiosignalsLanguage model41OpennessLingshu
3—147.9KGeneralist medical multimodal LLM for image understanding, visual question answering, and report generation across twelve-plus imaging modalities.
ImagingLanguage model70OpennessKRONOS
2025561Spatial proteomics foundation model, marker-aware and panel-agnostic, pretrained on 47 million multiplexed tissue-imaging patches from 175 markers.
Spatial omicsPathology12OpennessBioMed Multi-Omic
62—20Open-source framework for building RNA and DNA foundation models, featuring WCED pretraining for transcriptomics and SNP-aware encoding for genomics.
DNA & Gene84OpennessBioCLIP 2
774247.7KVision foundation model for the tree of life, trained on 214 million organism images across 952,000 taxa for zero-shot species classification.
Imaging93OpennessDreaMS
19269—Self-supervised transformer pretrained on millions of tandem mass spectra, giving embeddings for spectral annotation and fingerprint prediction.
MetabolomicsSmall molecule98OpennessBrainOmni
7128—Brain foundation model unifying EEG and MEG in a single encoder via a shared discrete tokenizer that transfers across sensor layouts and montages.
Biosignals80OpennessCellpose-SAM
2.3K186—Generalist cell segmentation model pairing SAM's ViT-L encoder with Cellpose flow fields, outperforming average human annotators on its benchmark.
Imaging50OpennessSAM-Brain3D
54—Brain MRI segmentation foundation model trained on 66,000+ image-label pairs across 14 MRI sub-modalities, with a hypergraph dynamic adapter.
Imaging26OpennessUniBiomed
71—103Hong Kong University of Science and Technology +2 othersApril 30, 2025foundation_modelhistologymultimodal+6Universal foundation model that jointly generates diagnostic text and segments the corresponding targets across ten biomedical imaging modalities.
ImagingLanguage model64OpennessTranscriptFormer
15535—Generative single-cell foundation model trained on 112 million cells from 12 species, autoregressively modeling gene identities and expression counts.
Single-cell67OpennessShusi
11—Single-cell foundation model inferring context-specific protein-protein interactions from cancer transcriptomes via a variational graph autoencoder.
Single-cellProtein20OpennessOmniEM
—4—Unified electron microscopy image analysis toolkit built on EM-DINO, a vision foundation model pretrained on 5 million diverse EM images.
Imaging4OpennessmLLMCelltype
65210—Multi-LLM consensus framework for automated cell type annotation in scRNA-seq data, outperforming prior methods by ~15% in mean accuracy.
Single-cell37OpennessscPRINT
15454—Single-cell foundation model pre-trained on 50 million cells that infers cell-specific gene regulatory networks from transformer attention matrices.
Single-cell78OpennessSwin-BOB
5016—3D MRI organ segmentation foundation model built on Swin-UNETR and trained on the UKBOB whole-body dataset covering 72 organs and skeletal structures.
Imaging64Openness