All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 313336 of 943 models

  • OpticalDNA

    Hunan UniversityFebruary 2, 2026dnafoundation_modelgenomics+5

    Vision-language DNA model that renders genomic sequence as visual layouts, reading regions up to 450,000 bases with about 20x better token efficiency.

    DNA & Gene
    16Openness
  • Proust

    9934
    ETH ZurichFebruary 2, 2026foundation_modellanguage_modelprotein_design+3

    Causal 309M-parameter protein language model that scores variant fitness zero-shot and generates sequences, reaching 0.390 Spearman on ProteinGym.

    Protein
    9Openness
  • Beijing Zhongguancun Academy +4 othersJanuary 29, 2026autoregressivednafoundation_model+6

    Family of autoregressive genomic foundation models that reconcile k-mer tokenization with single-nucleotide resolution at contexts up to 98k bp.

    DNA & Gene
    86Openness
  • Gengram

    51
    Zhejiang LabJanuary 29, 2026dnafoundation_modelgenomics+5

    Retrieval-augmented genomic foundation model that gives transformer backbones a hash-based k-mer motif memory for functional genomics tasks.

    DNA & Gene
    83Openness
  • TwinCell

    DeepLifeJanuary 29, 2026cancerfoundation_modelgene_regulation+4

    Large causal cell model trained on cancer perturbation data that generalizes zero-shot to patient-derived cells for therapeutic target prioritization.

    Single-cell
    19Openness
  • EnzyPGM

    2
    University of Science and Technology of China +1 otherJanuary 27, 2026de_novo_designenzyme_designgenerative+5

    Enzyme design model that jointly generates enzyme sequences and substrate-binding pockets, conditioned on functional priors and substrate structure.

    ProteinSmall molecule
    23Openness
  • COSMIC

    EPFLJanuary 24, 2026autoencodercell_biologycell_type_annotation+7

    Bidirectional generative framework linking nuclear morphology and gene expression, built on a morphology model trained on 21 million segmented nuclei.

    ImagingSingle-cellSpatial omics
    4Openness
  • FoldVision

    Heinrich Heine University DüsseldorfJanuary 23, 2026cnndrug_discoveryenzymes+5

    Structure-based protein encoder that voxelizes every heavy atom into a 3D grid, learning orientation-robust representations for protein function.

    Protein
    20Openness
  • La-Proteina

    304141
    NVIDIAJanuary 23, 2026all_atomde_novo_designflow_matching+6

    Partially latent flow-matching model for de novo protein design, jointly generating sequence and all-atom structure for proteins up to 800 residues.

    Protein
    69Openness
  • PPIFlow

    3
    Changping LaboratoryJanuary 22, 2026antibodyde_novo_designflow_matching+5

    Flow-matching generative model for de novo protein binder backbone design, built on a Pairformer architecture with in silico interface maturation.

    Protein
    4Openness
  • Universidad Carlos III de MadridJanuary 22, 2026cnncryo_emdenoising+5

    Bioimage restoration model pairing a NAFNet backbone with a perceptual GAN loss, best on LPIPS in 7 of 8 AI4Life microscopy benchmarks.

    Imaging
    16Openness
  • Helmholtz Munich +2 othersJanuary 22, 2026language_modelmolecular_dynamicsproteomics+5

    LoRA adapter on ProstT5 predicting per-residue distributions over Foldseek 3Di tokens, capturing conformational flexibility from MD trajectories.

    Protein
    93Openness
  • SAGE-FM

    Stanford UniversityJanuary 21, 2026cell_type_annotationfoundation_modelgene_expression+4

    Spatial transcriptomics foundation model built on a lightweight graph convolutional network and trained by masked central-spot prediction.

    Spatial omicsSingle-cell
    10Openness
  • AQAffinity

    16
    SandboxAQJanuary 20, 2026binding_affinitydiffusiondrug_discovery+3

    Structure-free protein-ligand binding affinity predictor built on OpenFold3 that scores potency from a protein sequence and a ligand SMILES string.

    ProteinSmall molecule
    64Openness
  • PepEDiff

    2
    University of CincinnatiJanuary 19, 2026de_novo_designdiffusiongenerative+6

    Zero-shot peptide binder designer that runs diffusion in a pretrained protein embedding space, proposing binders without structure prediction.

    Protein
    62Openness
  • Tel Aviv UniversityJanuary 18, 2026ancestral_sequence_reconstructiongenerativemolecular_evolution+4

    Generative transformer for ancestral protein sequence reconstruction that needs no multiple sequence alignment or phylogenetic tree as input.

    Protein
    4Openness
  • Shandong UniversityJanuary 16, 2026diffusionfolding_pathway_simulationgenerative+5

    Evolution-guided diffusion model that generates temporal protein folding pathways, from unfolded chain to native state, rather than static structures.

    Protein
    64Openness
  • ConGLUDe

    Johannes Kepler University LinzJanuary 14, 2026binding_site_predictioncontrastive_learningdrug_discovery+7

    Contrastive geometric model unifying structure- and ligand-based drug design for zero-shot virtual screening, target fishing, and pocket selection.

    ProteinSmall molecule
    8Openness
  • GluFormer

    87
    Weizmann Institute of Science +2 othersJanuary 14, 2026continuous_glucose_monitoringfoundation_modelgenerative+6

    Generative transformer foundation model for continuous glucose monitoring, forecasting glycemia and stratifying health risk from raw glucose traces.

    Biosignals
    60Openness
  • EDEN

    4
    Basecamp ResearchJanuary 12, 2026de_novo_designfoundation_modelgenerative+5

    Metagenomic foundation model trained on 9.7 trillion nucleotide tokens for generative therapeutic design across genes, peptides, and microbiomes.

    DNA & GeneProtein
    13Openness
  • Northwestern Polytechnical UniversityJanuary 12, 2026aav_capsidde_novo_designdiffusion+5

    Diffusion model for de novo AAV capsid design that steers sampling with a viability classifier toward assemblable, packaging-competent variants.

    Protein
    5Openness
  • Seoul National University HospitalJanuary 12, 2026cancercell_type_annotationdata_generation+6

    Single-cell RNA-seq language model that treats cells as gene-expression tokens, synthesizing whole transcriptomes from tissue and disease metadata.

    Single-cellSpatial omics
    2Openness
  • Macao Polytechnic UniversityJanuary 12, 2026de_novo_designdiffusiongenerative+6

    Sequence-only latent diffusion model that designs target-specific peptide binders, cascaded with an affinity classifier through joint optimization.

    ProteinSmall molecule
    4Openness
  • OKR-CELL

    BGI ResearchJanuary 9, 2026batch_effect_correctioncell_biologycell_clustering+7

    Cross-modal single-cell foundation model that aligns gene-expression profiles with LLM-enriched cell descriptions in a shared embedding space.

    Single-cellLanguage model
    23Openness