University of Copenhagen

Transmembrane topology predictor that calls re-entrant regions and interfacial helices, and assigns each protein to one of 17 biological membranes.

Contrastive encoder aligning NMR metabolomics to the plasma proteome, adding proteome-level disease risk signal to cohorts with no proteomics.

Domain-specific foundation model for zero-shot plant root image segmentation, built on a MobileSAM backbone and trained across nine root datasets.

Backmapping model that rebuilds all-atom protein and nucleic acid structures from coarse-grained beads and inpaints unresolved residues.

Protein fitness prediction with end-to-end differentiable homology search, replacing MSA construction with vector search over 62M UniRef50 sequences.

Spatial transcriptomics foundation model learning subcellular transcript positions and cell-niche context from 17 million Xenium single cells.

Genome annotation model that labels 14 genic and regulatory element classes at single-nucleotide resolution across DNA windows up to 50 kb.

Predicts CLIP-seq crosslink counts along an RNA sequence base by base, separating protein-specific signal from experimental background.

Sleep staging model that segments polysomnography from any single EEG and EOG channel pair, labelling stages at resolutions finer than 30 s epochs.