Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 289–312 of 2565 models
Mixed-modality metagenomic language model using bidirectional Mamba blocks to embed proteins within 20K tokens of coding and non-coding DNA.
Somatic mutation risk model predicting base-pair mutability from DNA sequence per COSMIC signature, separating passenger hotspots from cancer drivers.
Genomics foundation model that represents individual DNA fragments in a learned semantic space for cell-free DNA cancer detection and cell typing.
Variable-length generative protein design across structure, sequence, motif scaffolding, and peptide co-design via a generalized Poisson flow.
Generative language model that designs drug-like SMILES conditioned on disease ontology and a target protein sequence for de novo drug discovery.
Spatial multi-omics integration model aligning RNA, protein, metabolomics, and histology to map cell-state gradients and cell-cell interactions.
Vision-language model for neuroblastoma pathology that reads H&E slides with their reports to grade tumors, infer biomarkers and stratify risk.
All-atom foundation model for immune-receptor design that predicts structures and co-designs CDR sequences for antibodies, nanobodies, and TCRs.
Transcription factor binding prediction pairing DNA sequence with base-resolution methylation and DNase accessibility for cell-type-specific calls.
Protease inhibitor prediction for small secreted proteins lacking an inhibitor domain, pairing protein language models with structure filtering.
Single-cell perturbation-response model predicting transcriptomic and cell-number changes for unseen perturbations plus inverse design.
EHR foundation model that reads each ICU hour as clinical text and rolls patient state forward autoregressively in a shared latent space.
T-cell receptor-MHC restriction prediction from amino acid sequence, mapping TCRs to their restricting HLA allele at 0.97 held-out AUC.
Pan-fungal circRNA prediction from genome sequence and gene annotation alone, ranking candidate backsplice junctions without requiring RNA-seq.
Physics-informed graph neural network predicting metabolite concentrations from gene expression, generalizing zero-shot to unseen metabolites.
Spatial transcriptomics prediction from histology using conditional neural fields to reconstruct continuous gene expression fields.
Structure-based drug design language model fusing protein structural and evolutionary encoders with SAFE fragment tokens for hit-to-lead generation.
RNA modification profiling from nanopore direct RNA-seq signal; self-supervised pretraining resolves 11 modification types and extends to new ones.
Vision-language model that reads molecular structure images, translating them to SMILES, captions, and properties via chemical-bond topology.
Brain MRI morphometry model that estimates cortical thickness, surface area, and volume in milliseconds instead of hours.