All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 1–8 of 8 filtered models
BioMatrix
41—162Decoder-only foundation model that unifies sequences, 3D structures, and natural language for small molecules and proteins in one shared token space.
ProteinSmall moleculeLanguage model67OpennessMolecular reasoning model built on DeepSeek-7B, using chain-of-thought and reinforcement learning for property prediction, generation, and reactions.
Small moleculeLanguage model21OpennessMMPT-RAG
—1—Retrieval-augmented model for matched molecular pair transformations, proposing localized analog edits guided by retrieved reference compounds.
Small molecule16OpennessE(3)-equivariant diffusion model for macrocycle design that turns acyclic molecules into macrocycles, with a transformer choosing where to cyclize.
Small molecule8OpennessGEMGen
—2—Generative language model for phenotype-driven drug discovery, proposing small-molecule structures from up- and down-regulated gene signatures.
Small moleculeSingle-cell9OpennessFlexiFlow
———Flow-matching model that jointly samples 3D de novo molecules and several low-energy conformers, extending to pocket-conditioned ligand design.
Small moleculeProtein19OpennessApo2Mol
37——Diffusion model for structure-based drug design that jointly generates 3D ligands and holo pocket conformations from an apo protein structure.
Small moleculeProtein65OpennessUniLingo3DMol
—183—Pretrained language model for 3D molecule generation in protein pockets, unifying de novo and fragment-based drug design in one multi-task framework.
Small molecule8Openness