Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 193–216 of 2336 models
Variable-length generative protein design across structure, sequence, motif scaffolding, and peptide co-design via a generalized Poisson flow.
Spatial multi-omics integration model aligning RNA, protein, metabolomics, and histology to map cell-state gradients and cell-cell interactions.
Vision-language model for neuroblastoma pathology that reads H&E slides with their reports to grade tumors, infer biomarkers and stratify risk.
Generative language model that designs drug-like SMILES conditioned on disease ontology and a target protein sequence for de novo drug discovery.
All-atom foundation model for immune-receptor design that predicts structures and co-designs CDR sequences for antibodies, nanobodies, and TCRs.
Transcription factor binding prediction pairing DNA sequence with base-resolution methylation and DNase accessibility for cell-type-specific calls.
Protease inhibitor prediction for small secreted proteins lacking an inhibitor domain, pairing protein language models with structure filtering.
EHR foundation model that reads each ICU hour as clinical text and rolls patient state forward autoregressively in a shared latent space.
T-cell receptor-MHC restriction prediction from amino acid sequence, mapping TCRs to their restricting HLA allele at 0.97 held-out AUC.
Single-cell perturbation-response model predicting transcriptomic and cell-number changes for unseen perturbations plus inverse design.
Pan-fungal circRNA prediction from genome sequence and gene annotation alone, ranking candidate backsplice junctions without requiring RNA-seq.
RNA modification profiling from nanopore direct RNA-seq signal; self-supervised pretraining resolves 11 modification types and extends to new ones.
Physics-informed graph neural network predicting metabolite concentrations from gene expression, generalizing zero-shot to unseen metabolites.
Spatial transcriptomics prediction from histology using conditional neural fields to reconstruct continuous gene expression fields.
Structure-based drug design language model fusing protein structural and evolutionary encoders with SAFE fragment tokens for hit-to-lead generation.
Vision-language model that reads molecular structure images, translating them to SMILES, captions, and properties via chemical-bond topology.
Brain MRI morphometry model that estimates cortical thickness, surface area, and volume in milliseconds instead of hours.
Atomic protein model building from cryo-EM density maps, resolving conformational heterogeneity through atom-centric sampling and diffusion.
Diffusion model for 3D small-molecule design against protein-protein interaction sites, guided by the natural binding peptide or protein partner.
Atomic-level refinement of RNA 3D structures, using geometric attention networks to guide physics-based Monte Carlo sampling and L-BFGS optimization.
Histopathology-to-molecular alignment model that queries H&E slides with gene-set signatures to predict pathway activity without sequencing.