All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 193216 of 943 models

  • Digepath

    Chinese Academy of SciencesApril 1, 2026cancer_diagnosisfoundation_modelgastrointestinal_cancer+7

    Gastrointestinal histopathology foundation model pretrained on 353 million multi-scale patches from 210,000 H&E whole-slide images of GI tissue.

    Pathology
    15Openness
  • RegFormer

    BGI ResearchApril 1, 2026batch_integrationcell_clusteringdrug_response_prediction+5

    Single-cell foundation model combining regulatory network priors with a Mamba backbone for clustering, batch integration, and perturbation modeling.

    Single-cell
    10Openness
  • Human Protein Atlas +1 otherMarch 31, 2026diffusionfoundation_modelgenerative+4

    Generative imaging model simulating single-cell fluorescence microscopy for all 12,800 human proteins in the Human Protein Atlas.

    Imaging
    51Openness
  • EnzyGen2

    30
    Carnegie Mellon UniversityMarch 31, 2026de_novo_designenzyme_designfoundation_model+5

    Protein foundation model for de novo enzyme design that co-designs sequence and 3D structure under small-molecule ligand guidance, at 730M parameters.

    ProteinSmall molecule
    89Openness
  • AINN-P1

    AinnocenceMarch 30, 2026language_modellstmprotein_fitness_prediction+3

    Compact 167M-parameter protein language model built on a multiplicative LSTM, giving zero-shot variant effect and fitness prediction from sequence.

    Protein
    12Openness
  • CLOP-DiT

    Third Military Medical UniversityMarch 30, 2026contrastive_learningdata_augmentationdiffusion+7

    Generates single-cell transcriptomes from structured biological metadata via contrastive language-omics pretraining and a diffusion transformer.

    Single-cell
    10Openness
  • Carnegie Mellon UniversityMarch 27, 2026brain_computer_interfaceeegfoundation_model+5

    EEG foundation model pretrained by spectrogram reconstruction that improves online directional motor-imagery brain-computer interface control.

    Biosignals
    18Openness
  • Lingshu-Cell

    DAMO AcademyMarch 26, 2026diffusionfoundation_modelgene_expression+4

    Virtual cell model using masked discrete diffusion over the whole transcriptome to simulate scRNA-seq perturbation responses across tissues.

    Single-cell
    21Openness
  • IDPForge

    1656
    Chinese Academy of SciencesMarch 25, 2026conformational_ensembleconformational_ensemble_generationdiffusion+7

    Protein-language diffusion model generating all-atom conformational ensembles for intrinsically disordered proteins and disordered regions.

    Protein
    29Openness
  • EVA

    821
    GENTEL LabMarch 24, 2026aptameraptamer_designcircular_rna+9

    Generative RNA foundation model trained on 114 million full-length sequences for de novo design of tRNAs, aptamers, CRISPR guide RNAs, and mRNAs.

    RNA
    72Openness
  • ZeroFold

    University of Cambridge +1 otherMarch 24, 2026binding_affinity_predictioncross_attentiondrug_discovery+3

    Transformer that predicts protein-RNA binding affinity from Boltz-2 pre-structural embeddings via cross-modal attention, with no 3D structure step.

    RNAProtein
    23Openness
  • Golab (SAIS Physics Lab)March 23, 2026diffusiondrug_discoveryfoundation_model+4

    Molecular foundation models pretrained on density functional theory data, encoding 3D geometry and quantum behavior for ADMET and drug discovery.

    Small molecule
    46Openness
  • ProAR

    Peking UniversityMarch 21, 2026autoregressiveconformational_samplinggenerative+4

    Autoregressive generative model for protein molecular dynamics that emits flexible-length trajectories frame by frame with anti-drifting sampling.

    Protein
    19Openness
  • genbio.aiMarch 20, 2026foundation_modelhistologyrepresentation_learning+3

    Histopathology foundation model with 1.1B parameters, trained entirely on public data using JEDI, a dual-stage strategy combining JEPA and DINO.

    Pathology
    21Openness
  • Arc Institute +3 othersMarch 20, 2026go_term_annotationlarge_language_modelmultimodal+5

    Multimodal reasoning LLM for protein function prediction, fusing protein language model embeddings to emit interpretable GO-term reasoning traces.

    ProteinLanguage model
    58Openness
  • CLIPepPI

    2
    Hebrew University of JerusalemMarch 20, 2026contrastive_learningpeptide_binding_predictionprotein_protein_interaction+5

    Contrastive dual-encoder model embedding protein domains and peptides in one space to predict domain-peptide binding specificity at proteome scale.

    Protein
    50Openness
  • GO-GPT

    122968
    Bowang LabMarch 20, 2026gene_ontologygenerativego_term_annotation+3

    Protein function prediction model that autoregressively generates Gene Ontology terms from amino acid sequence instead of classifying fixed labels.

    Protein
    55Openness
  • RNAGAN

    189
    The University of Hong KongMarch 20, 2026cancercell_type_annotationdata_generation+5

    Generative adversarial network trained on single-cell and bulk RNA-seq for sample stratification, marker analysis, and synthetic data generation.

    Single-cell
    60Openness
  • ProteinSage

    BioMapMarch 19, 2026foundation_modelprotein_structurerepresentation_learning+3

    Structure-aware protein language model using structure-guided masking and a causal objective for variant effect prediction and protein discovery.

    Protein
    12Openness
  • ChironRNA

    University of VirginiaMarch 19, 2026diffusiongenerativegraph_neural_network+3

    All-atom E(3)-equivariant diffusion model that refines RNA structures by resolving steric clashes and completing missing atoms.

    RNA
    19Openness
  • Hacettepe UniversityMarch 19, 2026cheminformaticscontrastive_learningdrug_discovery+5

    Multimodal molecular foundation model fusing SELFIES, 2D graphs, text, and knowledge graphs via contrastive pretraining for property prediction.

    Small molecule
    55Openness
  • ATMOS

    4
    MilaMarch 18, 2026conformation_generationdiffusionfoundation_model+5

    Generative foundation model that produces atom-level molecular dynamics trajectories for protein monomers and protein-ligand complexes.

    Protein
    11Openness
  • Pro2RNA

    1
    Kitasato UniversityMarch 18, 2026codon_optimizationcodon_usagelanguage_model+5

    Multimodal reverse-translation language model that generates species-aware mRNA coding sequences from protein sequences, conditioned on host taxonomy.

    RNAProtein
    10Openness
  • PI-Mamba

    University of Illinois Urbana-ChampaignMarch 17, 2026de_novo_designflow_matchinggenerative+4

    Protein backbone design model pairing flow matching with a Mamba state-space backbone, generating long proteins in linear time with exact geometry.

    Protein
    23Openness