All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 193–216 of 943 models
Digepath
———Gastrointestinal histopathology foundation model pretrained on 353 million multi-scale patches from 210,000 H&E whole-slide images of GI tissue.
Pathology15OpennessRegFormer
———Single-cell foundation model combining regulatory network priors with a Mamba backbone for clustering, batch integration, and perturbation modeling.
Single-cell10OpennessProtiCelli
241—Generative imaging model simulating single-cell fluorescence microscopy for all 12,800 human proteins in the Human Protein Atlas.
Imaging51OpennessEnzyGen2
30——Protein foundation model for de novo enzyme design that co-designs sequence and 3D structure under small-molecule ligand guidance, at 730M parameters.
ProteinSmall molecule89OpennessAINN-P1
———Compact 167M-parameter protein language model built on a multiplicative LSTM, giving zero-shot variant effect and fitness prediction from sequence.
Protein12OpennessCLOP-DiT
———Generates single-cell transcriptomes from structured biological metadata via contrastive language-omics pretraining and a diffusion transformer.
Single-cell10OpennessEEG foundation model pretrained by spectrogram reconstruction that improves online directional motor-imagery brain-computer interface control.
Biosignals18OpennessLingshu-Cell
———Virtual cell model using masked discrete diffusion over the whole transcriptome to simulate scRNA-seq perturbation responses across tissues.
Single-cell21OpennessIDPForge
1656—Chinese Academy of SciencesMarch 25, 2026conformational_ensembleconformational_ensemble_generationdiffusion+7Protein-language diffusion model generating all-atom conformational ensembles for intrinsically disordered proteins and disordered regions.
Protein29OpennessEVA
821—Generative RNA foundation model trained on 114 million full-length sequences for de novo design of tRNAs, aptamers, CRISPR guide RNAs, and mRNAs.
RNA72OpennessZeroFold
———University of Cambridge +1 otherMarch 24, 2026binding_affinity_predictioncross_attentiondrug_discovery+3Transformer that predicts protein-RNA binding affinity from Boltz-2 pre-structural embeddings via cross-modal attention, with no 3D structure step.
RNAProtein23OpennessSuiren-1.0
174—Molecular foundation models pretrained on density functional theory data, encoding 3D geometry and quantum behavior for ADMET and drug discovery.
Small molecule46OpennessProAR
———Autoregressive generative model for protein molecular dynamics that emits flexible-length trajectories frame by frame with anti-drifting sampling.
Protein19OpennessGenBio-PathFM
372501Histopathology foundation model with 1.1B parameters, trained entirely on public data using JEDI, a dual-stage strategy combining JEPA and DINO.
Pathology21OpennessBioReason-Pro
1229—Multimodal reasoning LLM for protein function prediction, fusing protein language model embeddings to emit interpretable GO-term reasoning traces.
ProteinLanguage model58OpennessCLIPepPI
2——Hebrew University of JerusalemMarch 20, 2026contrastive_learningpeptide_binding_predictionprotein_protein_interaction+5Contrastive dual-encoder model embedding protein domains and peptides in one space to predict domain-peptide binding specificity at proteome scale.
Protein50OpennessGO-GPT
122968Protein function prediction model that autoregressively generates Gene Ontology terms from amino acid sequence instead of classifying fixed labels.
Protein55OpennessRNAGAN
189—Generative adversarial network trained on single-cell and bulk RNA-seq for sample stratification, marker analysis, and synthetic data generation.
Single-cell60OpennessProteinSage
———Structure-aware protein language model using structure-guided masking and a causal objective for variant effect prediction and protein discovery.
Protein12OpennessChironRNA
———All-atom E(3)-equivariant diffusion model that refines RNA structures by resolving steric clashes and completing missing atoms.
RNA19OpennessSELFormerMM
38—Multimodal molecular foundation model fusing SELFIES, 2D graphs, text, and knowledge graphs via contrastive pretraining for property prediction.
Small molecule55OpennessPro2RNA
—1—Multimodal reverse-translation language model that generates species-aware mRNA coding sequences from protein sequences, conditioned on host taxonomy.
RNAProtein10OpennessPI-Mamba
———Protein backbone design model pairing flow matching with a Mamba state-space backbone, generating long proteins in linear time with exact geometry.
Protein23Openness