All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 169192 of 943 models

  • University College LondonApril 17, 2026gated_fusiongo_term_predictionmultimodal+5

    Protein function prediction model that fuses sequence, structure, text, and interaction embeddings with learned gating to assign Gene Ontology terms.

    Protein
    84Openness
  • University of Texas at Austin +1 otherApril 17, 2026bertdrug_discoveryfoundation_model+7

    Chemical language models pretrained on SMILES for therapeutic peptides, natively representing non-canonical residues, cyclization, and conjugation.

    Small moleculeProtein
    79Openness
  • GPT-Rosalind

    4.6K
    OpenAIApril 16, 2026dnadrug_discoveryfoundation_model+9

    OpenAI's frontier reasoning model for life-sciences research, tuned for multi-step workflows in protein engineering, genomics, and drug discovery.

    Language model
    5Openness
  • DIA-CLIP

    AI for Science Institute +1 otherApril 16, 2026contrastive_learningencoder_decoderfoundation_model+6

    Contrastive dual-encoder model for DIA proteomics, embedding peptides and spectra in a shared space for zero-shot peptide-spectrum matching.

    Protein
    11Openness
  • LAAS-CNRS +1 otherApril 16, 2026conditional_generationconformational_ensemblesde_novo_design+6

    Encoder-decoder Transformer that generates intrinsically disordered protein sequences conditioned on target conformational-ensemble descriptors.

    Protein
    10Openness
  • LinkLlama

    101.9K13
    UC BerkeleyApril 16, 2026de_novo_designdrug_discoverygenerative+4

    Molecular linker design model fine-tuned from Llama 3 that emits PROTAC and fragment linkers as SMILES from natural-language geometry prompts.

    Small molecule
    27Openness
  • Germinal

    27134
    Stanford University +1 otherApril 15, 2026antibodyde_novo_designgenerative+3

    Generative pipeline for epitope-targeted de novo antibody (nanobody) CDR design that yields nanomolar binders from only dozens of designs per antigen.

    Protein
    37Openness
  • xVERSE

    29
    Duke UniversityApril 14, 2026batch_effect_correctionfoundation_modelgenerative+5

    Transcriptomics-native single-cell foundation model that learns batch-invariant cell representations and probabilistically generates virtual cells.

    Single-cell
    10Openness
  • OmniNA

    100
    Beijing Institute of Genomics +1 otherApril 13, 2026dnafoundation_modelgenome+7

    Generative DNA foundation model trained on 91.7M nucleotide sequences and annotations for species classification and mutation effect prediction.

    DNA & Gene
    42Openness
  • IDiom

    1
    Chinese Academy of SciencesApril 11, 2026foundation_modelintrinsically_disordered_protein_designintrinsically_disordered_region+5

    Autoregressive language model trained on 37 million intrinsically disordered region sequences, generating IDRs given flanking folded domains.

    Protein
    19Openness
  • Deep-Plant

    1
    Colorado State University +1 otherApril 9, 2026chromatincnnenhancer_prediction+6

    Chromatin-informed foundation model predicting regulatory activity and chromatin state directly from plant genomic sequence in Arabidopsis and rice.

    DNA & Gene
    87Openness
  • ByteDance AI LabApril 8, 2026antibodyantibody_designde_novo_design+6

    464M-parameter structure prediction and design model that improves antibody-antigen complex accuracy over Protenix-v1 and adds generative VHH design.

    Protein
    81Openness
  • DISCO

    2083
    FutureHouse +2 othersApril 6, 2026all_atomcofactorde_novo_design+9

    Multimodal diffusion model that co-designs protein sequence and 3D structure around cofactors and small molecules for de novo heme enzyme design.

    Protein
    70Openness
  • GenoJEPA

    21
    Beijing University of Posts and TelecommunicationsApril 6, 2026foundation_modelgenomicsrepresentation_learning+4

    Genomic foundation model that learns DNA representations by predicting masked regions in latent space rather than reconstructing raw nucleotides.

    DNA & Gene
    22Openness
  • Halo

    Duke University School of MedicineApril 6, 2026cell_segmentationcellpose_sammultimodal+5

    Whole-cell segmentation model for spatial transcriptomics that fuses DAPI nuclear images with RNA transcript density to recover true cell boundaries.

    Spatial omics
    63Openness
  • MuPD

    280
    Stanford UniversityApril 4, 2026data_augmentationdiffusion_transformerfoundation_model+7

    Diffusion-transformer pathology model embedding H&E histology, RNA profiles, and clinical text in a latent space for zero-shot cross-modal synthesis.

    PathologySpatial omics
    15Openness
  • STORM

    2
    Stanford UniversityApril 4, 2026clinical_outcome_predictionfoundation_modelgene_expression_prediction+6

    Spatial transcriptomics foundation model pairing gene expression with H&E histology for spatial domain discovery and clinical outcome prediction.

    Spatial omicsPathology
    17Openness
  • PlantCAD2

    972.8K
    Cornell UniversityApril 3, 2026foundation_modelfunctional_annotationgene_expression+7

    Long-context plant DNA language model, 676M parameters on a Mamba2 backbone, pretrained on 65 angiosperm genomes for cross-species variant annotation.

    DNA & Gene
    69Openness
  • seq2ribo

    10365
    Carnegie Mellon UniversityApril 3, 2026mambamrnamrna_design+4

    Hybrid framework that predicts ribosome location profiles from mRNA sequence alone, pairing a structure-aware TASEP simulation with a Mamba polisher.

    RNA
    18Openness
  • GATSBI

    13
    Stanford UniversityApril 3, 2026embeddingsfunction_predictiongraph_attention_network+4

    Graph attention model that learns context-aware protein embeddings from protein-protein interaction, co-expression, and tissue association networks.

    Protein
    94Openness
  • muat

    8
    University of HelsinkiApril 3, 2026attentioncancer_genomicsrepresentation_learning+5

    Transformer that classifies tumour types and subtypes from somatic variants in whole-genome and whole-exome data, with auto-downloading checkpoints.

    DNA & Gene
    65Openness
  • Chinese Academy of SciencesApril 2, 2026codoncodon_optimizationfoundation_model+8

    Autoregressive model for therapeutic mRNA design that jointly generates 5' UTR, CDS, and 3' UTR, pretrained on 30 million full-length natural mRNAs.

    RNA
    10Openness
  • scLong

    2110
    Chinese Academy of SciencesApril 1, 2026batch_integrationcell_type_annotationfoundation_model+5

    Billion-parameter single-cell foundation model with self-attention over 28,000 human genes, adding Gene Ontology priors via a graph neural network.

    Single-cell
    29Openness
  • Cold Spring Harbor LaboratoryApril 1, 2026de_novo_designdiffusiongene_expression+5

    Discrete diffusion model that designs regulatory DNA with tunable cell-type-specific activity and learns activity-predictive representations.

    DNA & Gene
    49Openness