Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 1921–1944 of 2336 models
Extends an ESM-2 token embedding matrix with EC, GO, InterPro and Gene3D tokens so one transformer reads residues and ontology terms together.
Single-cell foundation model pre-trained on 50 million cells for gene network inference, denoising, and cell type prediction.
Genome language model that embeds a genome as a set of contextualized protein embeddings, pretrained on over 100,000 viruses for viromics.
Chromatin-state language model pretrained on ROADMAP annotations from 127 human cell types to find chromatin-state motifs and predict gene expression.
Multi-omics transformer generating transcriptomic, methylation and proteomic signatures for a given tissue, disease, age group, sex and compound.
DNA language model of the human genome with a vocabulary learned by byte-pair encoding rather than fixed k-mers, fine-tuned for genome biology tasks.
Framework turning single-cell expression profiles into ranked gene-name sequences, letting off-the-shelf language models generate and annotate cells.
Interactive foundation model for biomedical image segmentation, prompted with scribbles, clicks, and bounding boxes to segment unseen structures.
Protein complex structure assembly guided by predicted inter-chain domain-domain distances, averaging TM-score 0.769 across 46 CASP13-15 targets.
Histopathology image translation with diffusion, moving H&E tiles between stains, tumor types, and organ sites and editing them from omics profiles.
Histopathology vision transformer with 1.1B parameters, pretrained on patches from 500,000 H&E whole-slide images across 4,000 clinical practices.
Multimodal vision-language copilot for pathology that answers open-ended questions about histology images and reasons about differential diagnoses.
Predicts the radius of gyration of intrinsically disordered proteins from 23 physics-derived sequence features, screening missense mutants in bulk.
Structure-based mutational effect prediction from local atomic environments, scoring how substitutions change protein stability and binding affinity.
Lightweight AlphaFlow variant that fine-tunes only AlphaFold's structure module, keeping the Evoformer frozen to cut conformational sampling cost.
RNA language model that switches between nucleotide and byte-pair tokenization by input length, so one 117M encoder handles sequences of any length.
Cell-free RNA language model for multi-cancer detection, classifying plasma samples straight from raw sequencing reads without gene annotation.
Chest X-ray conversational assistant that fine-tunes LLaVA-Med on instruction data enriched with predictions from expert radiograph classifiers.
Variational autoencoder pretrained on 74 million human single-cell transcriptomes from the CELLxGENE Census for batch correction and cell typing.
Semi-supervised cryo-ET segmentation framework that adapts DINOv2 vision transformers for 3D organelle annotation using sparse 2D slice labels.
Generative biological foundation model placing DNA, RNA, and protein in one shared vocabulary, spanning genomic, proteomic, and cross-molecule tasks.
Mitochondrial ultrastructure segmentation in electron microscopy volumes, resolving membranes and cristae with cross-sample domain adaptation.
Histopathology multimodal assistant answering questions about H&E patches, pairing a pathology-trained CLIP tower with a 13B Vicuna language model.
Histopathology vision-language model classifying H&E patches zero-shot from text prompts, trained on 1.6M captions written for whole-slide crops.