Academic

University of Tokyo

A national research university in Tokyo and Japan's flagship, spanning medicine, engineering, and the life sciences with a global research mission.

Location: Tokyo, Japan
Website
6 models(2 DNA & Gene, 2 Language model, 1 Protein, 1 RNA, 1 Imaging, 1 Pathology)

Models (6)

BacteReason

University of Tokyo

Released June 7, 2026

Reasoning LLM that predicts antimicrobial susceptibility of clinical bacterial isolates and supplies mechanistic explanations for each prediction.

DNA & GeneLanguage model

Proteo-R1

Stanford University / University of Tokyo / RIKEN Center for Advanced Intelligence Project / Chinese University of Hong Kong

Released May 1, 2026

13.2K63

Reasoning-guided foundation model for de novo antibody CDR design, pairing a multimodal LLM understanding expert with a Boltz-1 diffusion expert.

Protein

mRNA-GPT

Kitasato University / University of Tokyo / National Institute of Advanced Industrial Science and Technology

Released December 24, 2025

14

GPT-style generative language model for mRNA coding sequences, pretrained across bacteria, eukaryotes, and archaea for de novo CDS design.

RNA

Med-R1

Emory University / University of Southern California / University of Tokyo / Johns Hopkins University / Georgia Institute of Technology

Released March 18, 2025

679128

Medical vision-language model trained with reinforcement learning for generalizable reasoning across eight imaging modalities and five question types.

ImagingLanguage model

TITAN

Mahmood Lab / Brigham and Women's Hospital / Helmholtz Munich / University of Tokyo

Released November 29, 2024

35151.2K356

Slide-level pathology foundation model turning whole-slide images into reusable embeddings for classification, retrieval, and report generation.

Pathology

ChromBERT (chromatin-state motifs)

University of Tokyo

Released July 25, 2024

212

Chromatin-state language model pretrained on ROADMAP annotations from 127 human cell types to find chromatin-state motifs and predict gene expression.

DNA & Gene