All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 169192 of 217 filtered models

  • FLOWR.root

    1383
    Pfizer +3 othersOctober 2, 2025binding_affinity_predictionde_novo_designflow_matching+4

    SE(3)-equivariant flow-matching model for pocket-aware 3D ligand generation, predicting binding affinity and confidence in the same network.

    Small moleculeProtein
    87Openness
  • Institute of Science and Technology Austria +1 otherOctober 1, 2025cell_paintingdiffusiongenerative+4

    Diffusion model for multichannel fluorescent cell microscopy, generating morphologically plausible images aligned to OpenPhenom phenotypic embeddings.

    ImagingSingle-cell
    22Openness
  • Caliby

    1075
    Stanford UniversitySeptember 30, 2025generativeinverse_foldingpotts_model+1

    Potts-model inverse folding that conditions on a structural ensemble rather than a single backbone, improving designability and self-consistency.

    Protein
    72Openness
  • EiRA

    2
    Hunan UniversitySeptember 2, 2025binder_designdnagenerative+6

    Protein binder design model post-trained from a multimodal protein language model to bind proteins, peptides, small molecules, and nucleic acids.

    Protein
    13Openness
  • TDFold

    Beijing Normal UniversityJuly 5, 2025diffusiongenerativegraph_neural_network+2

    Single-sequence protein structure predictor that adapts image diffusion to generate 2D inter-residue templates, folding proteins without an MSA.

    Protein
    10Openness
  • Chan Zuckerberg InitiativeApril 29, 2025cell_type_annotationcross_speciesdisease_prediction+6

    Generative single-cell foundation model trained on 112 million cells from 12 species, autoregressively modeling gene identities and expression counts.

    Single-cell
    67Openness
  • ProGen3

    11454217
    ProfluentApril 16, 2025de_novo_designfoundation_modelgenerative+6

    Sparse mixture-of-experts autoregressive protein language model family pretrained on 1.5 trillion amino acid tokens with compute-optimal scaling.

    Protein
    33Openness
  • RAG-ESM

    2716
    EPFLApril 2, 2025de_novo_designgenerativemotif_scaffolding+5

    Retrieval-augmented protein language model that conditions ESM-2 on homologous sequences via cross-attention for conditional sequence generation.

    Protein
    90Openness
  • Med-R1

    128140
    Emory University +4 othersMarch 18, 2025disease_diagnosisgenerativehistology+7

    Medical vision-language model trained with reinforcement learning for generalizable reasoning across eight imaging modalities and five question types.

    ImagingLanguage model
    45Openness
  • University of Zurich +1 otherMarch 3, 2025conditional_generationdiffusiongenerative+3

    Patch-based 3D diffusion model that generates teravoxel-scale virtual mouse brain volumes conditioned on spatially resolved gene expression.

    Spatial omicsImaging
    78Openness
  • Tsinghua UniversityFebruary 27, 2025cross_attentiondata_generationdiffusion+4

    Latent diffusion model for single-cell multi-omics generation and modality translation, with gradient-based inference of gene regulatory networks.

    Single-cell
    85Openness
  • Evo 2

    4K28811.8K
    Arc InstituteFebruary 21, 2025dnafoundation_modelgenerative+2

    Genomic foundation model trained on 9.3 trillion DNA base pairs across all domains of life, with 40B parameters and a 1-million-token context.

    DNA & Gene
    92Openness
  • Tahoe-100M-SCVI

    1.7K123
    Tahoe TherapeuticsFebruary 20, 2025autoencodercancerembeddings+6

    scVI variational autoencoder trained on the Tahoe-100M drug-perturbation atlas, giving a 10-dimensional embedding of treated cancer cell states.

    Single-cell
    93Openness
  • DOE Joint Genome Institute +6 othersFebruary 5, 2025de_novo_designfoundation_modelgenerative+6

    4B-parameter generative genome foundation model trained on assembled environmental metagenomes for microbial representation and de novo DNA design.

    DNA & Gene
    49Openness
  • MINIM

    158138
    Peking University +2 othersFebruary 1, 2025data_augmentationdiffusionfoundation_model+9

    Text-to-image diffusion model that generates synthetic medical images across imaging modalities and organs to augment scarce clinical training data.

    Imaging
    41Openness
  • CryoLens

    19
    Chan Zuckerberg InitiativeJanuary 1, 2025cnncryo_etgenerative+6

    Variational autoencoder that learns interpretable representations of protein subtomograms from cryo-ET, trained on 5.8 million synthetic particles.

    Imaging
    74Openness
  • ppLM-CO

    University of AlbertaDecember 12, 2024codon_optimizationgenerativelanguage_model+4

    Codon optimization framework that adds a generative head to a frozen ProtBert protein language model to design highly expressed coding sequences.

    RNAProtein
    12Openness
  • BioEmu-1

    855340
    MicrosoftDecember 5, 2024conformational_ensemblefoundation_modelgenerative+3

    Generative model that emulates protein equilibrium ensembles, sampling cryptic pockets and unfolded states far faster than molecular dynamics.

    Protein
    71Openness
  • PLAID

    12714
    UC Berkeley +1 otherDecember 2, 2024de_novo_designdiffusiongenerative+4

    Latent diffusion model for controllable all-atom protein generation that co-designs sequence and structure while training on sequences alone.

    Protein
    77Openness
  • p-IgGen

    13297
    Oxford Protein Informatics Group (OPIG) +1 otherNovember 9, 2024antibodyde_novo_designfoundation_model+5

    Antibody language model that generates paired heavy and light variable domains, with a developability-conditioned variant for manufacturable designs.

    Protein
    68Openness
  • BC-Design

    213
    Gerstein Lab +1 otherNovember 3, 2024antibodyantibody_designenzyme+7

    Biochemistry-aware inverse folding model that augments backbone geometry with physicochemical point clouds, reaching ~90% sequence recovery on CATH.

    Protein
    75Openness
  • Birkbeck, University of LondonOctober 22, 2024autoregressive_modelgenerativeguided_generation+6

    Autoregressive temporal convolutional network for synthetic yeast promoter design, trained with guidance from a sequence-to-expression predictor.

    DNA & Gene
    5Openness
  • CELL-Diff

    7
    Chan Zuckerberg InitiativeOctober 18, 2024cell_biologyde_novo_designdiffusion+7

    Diffusion model translating in both directions between protein sequences and fluorescence microscopy images to predict subcellular localization.

    Imaging
    87Openness
  • CryoFM

    35722
    ByteDance SeedOctober 11, 2024cryo_emdensity_mapsflow_matching+3

    Generative foundation model for cryo-EM density maps using flow matching, enabling zero-shot denoising, map sharpening, and missing wedge restoration.

    Imaging
    77Openness