All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 169–192 of 217 filtered models
FLOWR.root
1383—SE(3)-equivariant flow-matching model for pocket-aware 3D ligand generation, predicting binding affinity and confidence in the same network.
Small moleculeProtein87OpennessMorphGen
74—Institute of Science and Technology Austria +1 otherOctober 1, 2025cell_paintingdiffusiongenerative+4Diffusion model for multichannel fluorescent cell microscopy, generating morphologically plausible images aligned to OpenPhenom phenotypic embeddings.
ImagingSingle-cell22OpennessCaliby
1075—Potts-model inverse folding that conditions on a structural ensemble rather than a single backbone, improving designability and self-consistency.
Protein72OpennessEiRA
—2—Protein binder design model post-trained from a multimodal protein language model to bind proteins, peptides, small molecules, and nucleic acids.
Protein13OpennessTDFold
———Single-sequence protein structure predictor that adapts image diffusion to generate 2D inter-residue templates, folding proteins without an MSA.
Protein10OpennessTranscriptFormer
15736—Generative single-cell foundation model trained on 112 million cells from 12 species, autoregressively modeling gene identities and expression counts.
Single-cell67OpennessMed-R1
128140—Medical vision-language model trained with reinforcement learning for generalizable reasoning across eight imaging modalities and five question types.
ImagingLanguage model45OpennessTera-MIND
12—Patch-based 3D diffusion model that generates teravoxel-scale virtual mouse brain volumes conditioned on spatially resolved gene expression.
Spatial omicsImaging78OpennessscDiffusion-X
404—Latent diffusion model for single-cell multi-omics generation and modality translation, with gradient-based inference of gene regulatory networks.
Single-cell85OpennessEvo 2
4K28811.8KGenomic foundation model trained on 9.3 trillion DNA base pairs across all domains of life, with 40B parameters and a 1-million-token context.
DNA & Gene92OpennessTahoe-100M-SCVI
1.7K123—scVI variational autoencoder trained on the Tahoe-100M drug-perturbation atlas, giving a 10-dimensional embedding of treated cancer cell states.
Single-cell93OpennessGenomeOcean
150241K4B-parameter generative genome foundation model trained on assembled environmental metagenomes for microbial representation and de novo DNA design.
DNA & Gene49OpennessMINIM
158138—Text-to-image diffusion model that generates synthetic medical images across imaging modalities and organs to augment scarce clinical training data.
Imaging41OpennessCryoLens
19——Variational autoencoder that learns interpretable representations of protein subtomograms from cryo-ET, trained on 5.8 million synthetic particles.
Imaging74OpennessppLM-CO
———Codon optimization framework that adds a generative head to a frozen ProtBert protein language model to design highly expressed coding sequences.
RNAProtein12OpennessPLAID
12714—Latent diffusion model for controllable all-atom protein generation that co-designs sequence and structure while training on sequences alone.
Protein77Opennessp-IgGen
13297Oxford Protein Informatics Group (OPIG) +1 otherNovember 9, 2024antibodyde_novo_designfoundation_model+5Antibody language model that generates paired heavy and light variable domains, with a developability-conditioned variant for manufacturable designs.
Protein68OpennessBC-Design
213—Biochemistry-aware inverse folding model that augments backbone geometry with physicochemical point clouds, reaching ~90% sequence recovery on CATH.
Protein75OpennessGen-DNA-TCN
—2—Autoregressive temporal convolutional network for synthetic yeast promoter design, trained with guidance from a sequence-to-expression predictor.
DNA & Gene5OpennessCELL-Diff
7——Diffusion model translating in both directions between protein sequences and fluorescence microscopy images to predict subcellular localization.
Imaging87OpennessCryoFM
35722Generative foundation model for cryo-EM density maps using flow matching, enabling zero-shot denoising, map sharpening, and missing wedge restoration.
Imaging77Openness