Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 1777–1800 of 2336 models
Single-cell model that ranks the genes driving a cell state transition, using a gene graph-enhanced manifold pretrained on 20 million cells.
Pocket-conditioned peptide designer: twin diffusion models generate an inhibitor backbone from receptor pocket geometry, then predict its sequence.
Open foundation model for photoplethysmography (PPG), learning morphology-aware waveform representations for cardiovascular and wearable health tasks.
Text-guided molecule generation by linking a pretrained scientific text encoder to a frozen molecular language model with a cross-attention adapter.
Chemical perturbation model generating post-treatment transcriptomes for compounds and cell lines never screened, from SMILES structure and dose.
De novo peptide generation from four ProtGPT2 fine-tunes, one per design goal: hemolytic, non-hemolytic, non-fouling, and soluble sequences.
Genomic language model that labels adapter sequences in nanopore direct-RNA reads base by base, then splits the chimeric reads those adapters create.
Molecular foundation model that late-fuses graph, image, and SMILES encoders into one embedding for molecular property and drug target prediction.
All-atom structure tokenizer that turns proteins, RNA and small molecules into discrete 3D tokens and decodes them back below 1 Å RMSE.
Region-aware bilingual medical multimodal LLM that handles image- and region-level vision-language tasks across eight imaging modalities.
Protein complex interface quality assessment model that pairs persistent homology barcodes with a graph attention network to predict DockQ scores.
Spot detection and quantification in 5D fluorescence microscopy. Pretrained 2D and 3D U-Nets segment foci, then Gaussian fitting measures each one.
De novo peptide sequencing model that retrieves a similar peptide-spectrum match from a database and fuses it into transformer decoding.
Refines the CDR loops of a predicted antibody structure with SE(3) flow matching, steered at sampling time by bond, angle and torsion potentials.
Protein inverse folding by categorical diffusion, tuned with reinforcement learning on structural consistency. Samples diverse refoldable sequences.
Genomic sequence classification answered through natural-language prompts by one GPT-2 pretrained on mixed DNA and English under one BPE vocabulary.
Autoregressive temporal convolutional network for synthetic yeast promoter design, trained with guidance from a sequence-to-expression predictor.
Molecular docking and design foundation model that unifies structure-based drug design and peptide design at the atom level in one checkpoint.
Distinguishes experimentally resolved protein structures from predicted ones, pairing a Foldseek 3Di structural language model with a GVP-GNN.
Multimodal protein function annotation that scores a sequence against free-text descriptions, including GO and EC labels unseen during training.
Light-weight rigid protein-ligand docking model adapting the AlphaFold2 architecture, with a binding affinity module for virtual screening.
Multimodal large language model that interprets 12-lead electrocardiogram images, answering open-ended clinical questions and generating ECG reports.