Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 1801–1824 of 2565 models
Flexible protein-ligand docking that repacks the pocket side chains from the backbone and the ligand graph before a physics sampler places the ligand.
Radiology CT framework pairing lesion-driven contrastive slice embeddings with attention pooling to predict clinical endpoints without fine-tuning.
Histopathology image synthesis steered by a hand-drawn coarse tissue mask, refined into a fine-grained semantic mask before H&E or IHC rendering.
RNA-binding protein binding profiles predicted base by base across 800 bp windows, with an m6A signal channel that exposes methylation-RBP crosstalk.
Spatial transcriptomics foundation model aligning histology with gene expression at spot and neighborhood scale for zero-shot tissue domain calling.
Ultrasound foundation model pretrained by federated learning across 16 institutions, transferring to disease diagnosis and lesion segmentation.
Multi-scale latent diffusion model for histopathology that synthesizes tissue patches at any magnification and composes them into 4096-pixel images.
Promptable ultrasound image segmentation foundation model, a SAM adaptation trained on US-43d, the largest public ultrasound segmentation corpus.
Virtual staining diffusion model that converts kidney histology between H&E, Masson's trichrome, PAS, and PASM in any direction from one checkpoint.
Vector-based virtual screening model that co-embeds proteins and small molecules so a drug-target interaction reduces to a single dot product.
Prostate histopathology classifiers that split H&E tissue into benign, Gleason 3, 4 and 5 patches and aggregate those calls into an ISUP grade group.
Conditional denoising diffusion model that synthesizes chest radiographs from patient demographics and echocardiographic ventricular measurements.
Enhancer-promoter interaction prediction from DNA sequence and ATAC-seq alone. Spearman above 0.90 on cell types unseen during training.
Lung cancer histopathology model that predicts spread through air spaces from whole-slide images using a feature-interactive Siamese graph encoder.
Histopathology foundation model aligned to spatial transcriptomics by a cross-modal ranking loss, embedding H&E patches without gene input.
Metabolite annotation model embedding MS/MS spectra and molecular graphs in one contrastive space, ranking candidate structures by cosine similarity.
De novo peptide design across non-canonical amino acid space, using guided diffusion over receptor-ligand interfaces to reach D-amino acid chemistry.
Peptide identification for diaPASEF proteomics, scoring fragment coelution across retention time and ion mobility with a pretrained CNN.
Protein-protein interaction prediction from structure alone, embedding each protein once so a proteome-wide dot product replaces pairwise queries.
Single-cell foundation model trained by metric learning to embed scRNA-seq profiles for cell type annotation and similarity search in cell atlases.
Slide-level histopathology encoder that contrastively aligns tile embeddings from several patch foundation models through a Mamba-2 aggregator.
Target-conditioned generative language model that designs drug-like SMILES from a protein sequence, tuned on regulator-approved drug-target pairs.
Hydration-site prediction placing water molecules on protein surfaces by score-based diffusion, within 0.3 Å of crystallographic positions.