All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 817840 of 943 models

  • GPN-MSA

    349308
    UC BerkeleyOctober 11, 2023dnafoundation_modelgenomics+2

    DNA language model for variant effect prediction across coding and non-coding regions, using whole-genome alignments of 100 vertebrate species.

    DNA & Gene
    87Openness
  • PaddlePaddleOctober 9, 2023foundation_modelsingle_sequencestructure_prediction

    MSA-free protein structure prediction that replaces multiple sequence alignments with a protein language model pre-trained on billions of sequences.

    Protein
    12Openness
  • VisionFM

    12977
    Chinese University of Hong KongOctober 8, 2023biomarker_predictionfoundation_modeloct+3

    Multi-modal ophthalmic foundation model for generalist eye AI, spanning fundus imaging and OCT for disease screening, segmentation, and biomarkers.

    ImagingPathology
    14Openness
  • SaProt

    61334044.7K
    Westlake UniversityOctober 1, 2023foundation_modelprotein_function_predictionstructure_prediction+1

    Structure-aware protein language model pairing amino acid tokens with Foldseek 3Di structural states, outperforming ESM-2 across 10 downstream tasks.

    Protein
    91Openness
  • City University of Hong Kong +2 othersOctober 1, 2023cnnct_imagingmultimodal+6

    Abdominal CT segmentation model driven by CLIP text embeddings, covering 25 organs and 6 tumor types with zero-shot extension to new categories.

    Imaging
    26Openness
  • AlphaMissense

    6351.7K
    Google DeepMindSeptember 19, 2023fine_tunedgenomicstransfer_learning+2

    Missense variant pathogenicity predictor built on AlphaFold 2 representations, scoring variants across the human proteome at 0.940 AuROC on ClinVar.

    Protein
    44Openness
  • Virchow

    46110.8K
    Paige AISeptember 14, 2023digital_pathologyfoundation_modelhistology+3

    Histopathology foundation models: self-supervised vision transformers pretrained on millions of whole-slide images for tile-level feature extraction.

    Pathology
    42Openness
  • RETFound

    6596084
    University College London +1 otherSeptember 13, 2023disease_detectionfoundation_modelimage_classification+7

    Self-supervised foundation model for retinal imaging, pretrained on 1.6 million unlabelled fundus and OCT scans to detect ocular and systemic disease.

    ImagingPathology
    30Openness
  • UniBrain

    39183
    Shanghai Jiao Tong University +3 othersSeptember 13, 2023brain_mricnncontrastive_learning+6

    Vision-language pre-training framework for universal brain MRI diagnosis, learning from imaging-report pairs to cover more than ten brain diseases.

    Imaging
    35Openness
  • EvoDiff

    675226
    Microsoft ResearchSeptember 12, 2023cnnde_novo_designdiffusion+8

    Discrete diffusion model for protein sequence and MSA generation, enabling controllable de novo design directly in sequence space without structure.

    Protein
    84Openness
  • BrainLM

    17131
    Yale University +2 othersSeptember 12, 2023brain_state_forecastingclinical_variable_predictionfmri+7

    fMRI foundation model pretrained with masked autoencoding on roughly 6,700 hours of recordings for clinical prediction and network discovery.

    Biosignals
    25Openness
  • SAM-Med2D

    1.1K6
    Shanghai AI LaboratoryAugust 30, 2023foundation_modelhistologyradiology+4

    Medical imaging adaptation of the Segment Anything Model, fine-tuned on 4.6M images and 19.7M masks for promptable segmentation across 10 modalities.

    Imaging
    82Openness
  • PLIP

    38146.6K
    Stanford UniversityAugust 28, 2023contrastive_learningfoundation_modelhistology+3

    Vision-language foundation model for pathology, fine-tuned from CLIP on 208,414 image-text pairs for zero-shot classification and image retrieval.

    Imaging
    25Openness
  • GEARS

    384368
    SNAP (Stanford)August 17, 2023crispr_screen_analysisgenetic_interaction_predictiongenomics+5

    Perturbation prediction model that forecasts transcriptional responses to multi-gene CRISPR perturbations from scRNA-seq and a gene-gene graph.

    Single-cell
    68Openness
  • ABGNN

    5525
    Huazhong University of Science and Technology +1 otherAugust 6, 2023antibodygraph_neural_networkprotein_design+1

    Antibody CDR design framework pairing a pretrained antibody language model with a hierarchical graph neural network for one-shot CDR generation.

    Protein
    72Openness
  • RadFM

    559932
    Shanghai Jiao Tong University +1 otherAugust 4, 2023disease_diagnosisfoundation_modelgenerative+7

    Radiology foundation model that reads interleaved 2D and 3D scans with text for diagnosis, visual question answering, and report generation.

    ImagingLanguage model
    84Openness
  • MasterAI EAMAugust 1, 2023foundation_modellanguage_model

    Open large language models for natural science, fine-tuned on physics, chemistry, and materials science literature with automated instruction tuning.

    Language model
    24Openness
  • seq2cells

    1291
    GSK.aiJuly 28, 2023foundation_modelgene_expressionvariant_effect_prediction

    Transfer learning framework that predicts single-cell gene expression from ~200kb DNA sequences using Enformer embeddings and a lightweight MLP.

    DNA & Gene
    64Openness
  • Med-Flamingo

    451407
    Stanford University +2 othersJuly 27, 2023few_shotin_context_learningmedical_imaging+6

    Multimodal medical vision-language model for few-shot visual question answering, learning new imaging tasks from in-context examples at inference.

    PathologyLanguage model
    18Openness
  • Med-PaLM M

    139
    Google Research +1 otherJuly 26, 2023generativegenomicshistology+9

    Google's generalist multimodal biomedical AI that encodes clinical text, medical images, and genomics with a single set of weights across 14 tasks.

    ImagingLanguage model
    25Openness
  • ProstT5

    31715.1K
    RostlabJuly 25, 2023foundation_modelinverse_foldinglanguage_model+5

    Bilingual protein language model that translates bidirectionally between amino acid sequences and the 3Di structural alphabet for inverse folding.

    Protein
    76Openness
  • University of TübingenJuly 25, 2023dna_methylationepigenomic_predictionepigenomics+5

    Multi-language transformer framework using five pre-trained language models to predict DNA methylation (6mA, 4mC, 5hmC) across species.

    DNA & Gene
    89Openness
  • MoTT

    137
    Carnegie Mellon UniversityJuly 22, 2023cell_biologyimage_analysisrepresentation_learning+2

    Transformer-based single particle tracker for fluorescence microscopy, using multi-hypothesis attention to link particles at low SNR and high density.

    Imaging
    20Openness
  • Phikon

    17220.7K
    OwkinJuly 21, 2023biomarker_predictionfoundation_modelhistology+3

    Self-supervised histopathology foundation models for H&E whole-slide images. Phikon-v2 is a ViT-L/16 DINOv2 encoder used for biomarker prediction.

    Pathology
    35Openness