Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 817–840 of 2565 models
Self-supervised models that embed gut metagenomic abundance profiles for robust phenotype prediction in data-limited, cross-cohort settings.
Protein-protein docking scorer that ranks interface poses from image-encoded patches, swapping PIsToN's Vision Transformer for Vision Mamba.
EEG foundation model for brain-computer interfaces, pairing masked pretraining with a mixture-of-experts transformer across electrode montages.
Flow-matching model that predicts protein conformational ensembles across the order-disorder continuum, from folded domains to disordered chains.
All-atom generative model for de novo protein design using SE(3) flow matching over oriented residue rigid bodies.
Suite of large language models fine-tuned with LoRA to generate antigen-targeted antibody Fv sequences from an antigen and its epitope.
Molecular docking model that predicts protein-ligand binding poses with multi-stage Riemannian flow matching, yielding physically valid geometry.
Efficient sequence-to-function transformer for regulatory genomics, matching Borzoi-class models while training in about a day on a single GPU.
Self-supervised single-cell foundation model that predicts masked gene embeddings in latent space using a joint-embedding predictive architecture.
Protein conformational sampling framework that steers a retrained OpenFold with diverse secondary-structure predictions to recover alternative states.
Retrieval-augmented inverse folding model that fuses structural motif retrieval with a hybrid attention decoder to design sequences for a backbone.
Retrieval-augmented latent diffusion model for protein binder design, retrieving interfaces in a shared latent space across peptides and antibodies.
Protein structure autoencoder compressing backbone coordinates into a latent space, paired with a latent diffusion model for generative design.
Medical vision-language model that takes visual prompts on an image and returns answers grounded in pixel-level segmentation masks.
Autoregressive protein language model for antibody Fc domains, reinforcement-tuned to design variants with programmable Fc-receptor binding profiles.
De novo ligand design framework that generates protein binders and small molecules by inverting gradients through a differentiable docking model.
Protein foundation model with 3B parameters, pretrained jointly on sequence and 3D structure via masked language modeling and diffusion denoising.
Graph diffusion transformer for in-context molecular design, adapting to new tasks from a few molecule-property demonstrations without fine-tuning.