Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 817–840 of 2336 models
Transcriptome-guided diffusion model generating Cell Painting images for unseen perturbations, improving MOA retrieval accuracy by 16.9% over IMPA.
Image-to-image translation from label-free phase-contrast microscopy to H&E-like images, so pretrained histopathology models run on live cells.
Structure-based drug design model generating 3D ligands in a protein pocket with interaction-guided flow matching and a learned atom-count predictor.
Modality-agnostic foundation model for human brain imaging that runs five core neuroimaging tasks across uncalibrated CT and MRI without retraining.
Structure-based drug design model generating 3D ligands in protein pockets under gradient guidance for affinity, synthesizability, and selectivity.
Histopathology classifier separating atypical from normal mitotic figures, LoRA-adapting a DINOv3 vision transformer with 1.3M trainable parameters.
Protein degrader design framework that mines fragment-target data to build PROTACs and predicts degradation potency (DC50) and maximal degradation.
Generative antibody model that produces light-chain sequences conditioned on a heavy chain, pairing a RoBERTa encoder with a GPT-2 decoder.
Antibody-antigen binding free energy predictor fusing ESM-2 sequence embeddings with persistent homology and interface geometry via cross-attention.
Energy-based flow matching for 3D molecular structure, using an idempotent predict-and-refine map for protein backbone generation and ligand docking.
Simplex diffusion model for discrete sequence generation, with released checkpoints for DNA enhancer design and de novo protein sequence design.
Predicts residue-residue dynamic contact maps from a single sequence, matching molecular dynamics ensemble methods at a fraction of the compute.
Codon language model trained with synonymous-codon-constrained masking, so its embeddings encode nucleotide-level signal, not amino acid identity.
Generalist MRI vision-language foundation model that handles reconstruction, segmentation, abnormality detection, and report generation in one model.
Vision-language foundation model for kidney cancer CT, covering zero-shot malignancy diagnosis, report generation, and recurrence risk prediction.
Generative model that restores cytoplasm-enriched genes lost in snRNA-seq, recovering cell-cell communication signals from raw nuclear counts.
Protein-ligand binding model that embeds ligands, pockets, and sequences in hyperbolic space, unifying virtual screening and affinity ranking.
Single-cell foundation model for yeast that injects regulatory network priors into transformer attention for zero-shot and fine-tuned analysis.
Multi-organ segmentation network jointly trained on 10 CT and OCT datasets, reaching 0.83 mean Dice on the RETOUCH retinal fluid challenge.
All-atom protein structure diffusion models for motif scaffolding and hotspot-conditioned complex generation, at 22M parameters.
Reasoning language model post-trained on virtual cell simulations, answering questions about gene perturbations and their effects in natural language.