All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 817–840 of 943 models
GPN-MSA
349—308DNA language model for variant effect prediction across coding and non-coding regions, using whole-genome alignments of 100 vertebrate species.
DNA & Gene87OpennessHelixFold-Single
1.1K89—MSA-free protein structure prediction that replaces multiple sequence alignments with a protein language model pre-trained on billions of sequences.
Protein12OpennessVisionFM
12977—Multi-modal ophthalmic foundation model for generalist eye AI, spanning fundus imaging and OCT for disease screening, segmentation, and biomarkers.
ImagingPathology14OpennessSaProt
61334044.7KStructure-aware protein language model pairing amino acid tokens with Foldseek 3Di structural states, outperforming ESM-2 across 10 downstream tasks.
Protein91OpennessCLIP-Driven Universal Model
677356—Abdominal CT segmentation model driven by CLIP text embeddings, covering 25 organs and 6 tumor types with zero-shot extension to new categories.
Imaging26OpennessAlphaMissense
6351.7K—Missense variant pathogenicity predictor built on AlphaFold 2 representations, scoring variants across the human proteome at 0.940 AuROC on ClinVar.
Protein44OpennessRETFound
6596084University College London +1 otherSeptember 13, 2023disease_detectionfoundation_modelimage_classification+7Self-supervised foundation model for retinal imaging, pretrained on 1.6 million unlabelled fundus and OCT scans to detect ocular and systemic disease.
ImagingPathology30OpennessUniBrain
39183—Vision-language pre-training framework for universal brain MRI diagnosis, learning from imaging-report pairs to cover more than ten brain diseases.
Imaging35OpennessEvoDiff
675226—Discrete diffusion model for protein sequence and MSA generation, enabling controllable de novo design directly in sequence space without structure.
Protein84OpennessBrainLM
17131—Yale University +2 othersSeptember 12, 2023brain_state_forecastingclinical_variable_predictionfmri+7fMRI foundation model pretrained with masked autoencoding on roughly 6,700 hours of recordings for clinical prediction and network discovery.
Biosignals25OpennessSAM-Med2D
1.1K6—Medical imaging adaptation of the Segment Anything Model, fine-tuned on 4.6M images and 19.7M masks for promptable segmentation across 10 modalities.
Imaging82OpennessPLIP
381—46.6KVision-language foundation model for pathology, fine-tuned from CLIP on 208,414 image-text pairs for zero-shot classification and image retrieval.
Imaging25OpennessGEARS
384368—Perturbation prediction model that forecasts transcriptional responses to multi-gene CRISPR perturbations from scRNA-seq and a gene-gene graph.
Single-cell68OpennessABGNN
5525—Huazhong University of Science and Technology +1 otherAugust 6, 2023antibodygraph_neural_networkprotein_design+1Antibody CDR design framework pairing a pretrained antibody language model with a hierarchical graph neural network for one-shot CDR generation.
Protein72OpennessRadFM
559932—Radiology foundation model that reads interleaved 2D and 3D scans with text for diagnosis, visual question answering, and report generation.
ImagingLanguage model84OpennessDARWIN Series
24953—Open large language models for natural science, fine-tuned on physics, chemistry, and materials science literature with automated instruction tuning.
Language model24OpennessMed-Flamingo
451407—Multimodal medical vision-language model for few-shot visual question answering, learning new imaging tasks from in-context examples at inference.
PathologyLanguage model18OpennessMed-PaLM M
—139—Google's generalist multimodal biomedical AI that encodes clinical text, medical images, and genomics with a single set of weights across 14 tasks.
ImagingLanguage model25OpennessMuLan-Methyl
7107Multi-language transformer framework using five pre-trained language models to predict DNA methylation (6mA, 4mC, 5hmC) across species.
DNA & Gene89OpennessMoTT
137—Transformer-based single particle tracker for fluorescence microscopy, using multi-hypothesis attention to link particles at low SNR and high density.
Imaging20Openness