Academic

UCSF

A San Francisco university dedicated to the health sciences, joining patient care with research in genomics, immunology, and computational biology.

Location: San Francisco, CA
Website
6 models(2 DNA & Gene, 2 Protein, 2 Imaging, 1 Single-cell, 1 Language model)

Labs & Groups (1)

Models (6)

LEAF-1

McGill University / UCSF

Released July 10, 2026

Genomics foundation model that represents individual DNA fragments in a learned semantic space for cell-free DNA cancer detection and cell typing.

DNA & GeneSingle-cell

BioReason-Pro

Arc Institute / UCSF / University of Toronto / Vector Institute

Released March 20, 2026

9122

Multimodal reasoning LLM for protein function prediction, fusing protein language model embeddings to emit interpretable GO-term reasoning traces.

ProteinLanguage model

Microbiome Self-Supervised Learning

Weizmann Institute of Science / UCSF

Released October 19, 2025

1

Self-supervised models that embed gut metagenomic abundance profiles for robust phenotype prediction in data-limited, cross-cohort settings.

DNA & Gene

ProteinZen

UCSF

Released October 18, 2025

127

All-atom generative model for de novo protein design using SE(3) flow matching over oriented residue rigid bodies.

Protein

Cytoland

Chan Zuckerberg Biohub / Mehta Lab

Released June 3, 2024

9102

Virtual staining models that translate label-free light microscopy into fluorescent-equivalent predictions of nuclei and plasma membranes.

Imaging

EchoCLIP

Cedars-Sinai Medical Center / UCLA / UCSF

Released May 6, 2024

21851

CLIP-style vision-language model for echocardiography, pretrained on echo videos and cardiologist reports for zero-shot cardiac interpretation.

Imaging