Florida International University

Protein language model embedding enrichment that injects structural and dynamical signal as a low-energy residual, using sequence alone at inference.

Sequence-only dual-encoder contrastive model that ranks whole molecule libraries against a protein target without 3D structures or per-pair scoring.

SMILES molecular encoder on a DeBERTaV2 backbone, pretrained on 123M PubChem molecules with physicochemical and structural-similarity objectives.

Protein-protein docking scorer that ranks interface poses from image-encoded patches, swapping PIsToN's Vision Transformer for Vision Mamba.

Contrastive language-image model for fMRI functional decoding, predicting cognitive tasks, concepts, and domains from brain activation maps.