All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 673–696 of 943 models
- Charité – Universitätsmedizin BerlinSeptember 11, 2024clinical_phenotypingcontrastive_learningcross_modal_retrieval+5
Multimodal contrastive model aligning clinical EEG with free-text reports, enabling zero-shot EEG classification from natural-language prompts.
BiosignalsLanguage model26Openness CHIEF
715539—Weakly supervised histopathology foundation model pretrained on 60,530 whole-slide images for cancer detection, prognosis, and molecular prediction.
Pathology15OpennessMaCo
12——Chest X-ray foundation model that pairs masked image modeling with image-report contrastive alignment for zero-shot diagnosis and phrase grounding.
Imaging74OpennessHelixFold3
1.1K——Open-source reproduction of AlphaFold 3 that predicts structures of proteins, DNA, RNA, and small-molecule ligands, including their mixed complexes.
Protein14OpennessBELT-2
—12—EEG-to-language foundation model that pairs a Q-Conformer encoder with a frozen LLM to decode coherent sentences from non-invasive brain recordings.
BiosignalsLanguage model30OpennessSPIRED-Fitness
5039—End-to-end framework predicting protein structure and mutational fitness from a single sequence, with five-fold faster inference than ESMFold.
Protein79OpennessNeuroLM
163——Multi-task EEG foundation model that treats brain signals as a foreign language, pairing a text-aligned neural tokenizer with a GPT-2 backbone.
BiosignalsLanguage model66OpennessECG-Chat
8046—China University of Geosciences +2 othersAugust 16, 2024cardiologycontrastive_learningdisease_classification+6Multimodal ECG-language model aligning 12-lead waveforms with clinical report text for conversational cardiac diagnosis and report generation.
BiosignalsLanguage model27OpennessSiamQuality
181—Foundation model for photoplethysmography (PPG) that learns quality-robust waveform representations for heart rate, blood pressure, and AF detection.
Biosignals36OpennessECG-FM
29795—Open transformer foundation model for 12-lead electrocardiograms, pretrained on 1.5 million unlabeled ECGs with a wav2vec 2.0 self-supervised recipe.
Biosignals67OpennessBiomedGPT
7074011Open-source, lightweight generalist vision-language foundation model for diverse biomedical imaging and text tasks.
Language modelImagingPathology33OpennessAnatCL
1821—Brain MRI foundation model family pretrained with anatomically informed contrastive learning for diagnosis and clinical score prediction.
Imaging71OpennessLLaVA-Tri
41334Medical vision-language model trained on the MedTrinity-25M dataset, answering questions and generating text about radiology and histology images.
Language modelPathology30OpennessMADELEINE
6745—Slide-level pathology foundation model that learns whole-slide embeddings by aligning multiple stains of the same tissue during pretraining.
Pathology42OpennessCXR Foundation
19981192Chest X-ray embedding model built on ELIXR, producing image and image-text embeddings for data-efficient and zero-shot radiograph classification.
ImagingPINNACLE
1095—Geometric deep learning model generating context-aware protein representations across 156 cell-type contexts from a multi-organ single-cell atlas.
Single-cell83OpennessBioT5+
127—224Text-to-text biological language model spanning molecules, proteins, and text, adding IUPAC names and multi-task instruction tuning to BioT5.
Language modelSmall moleculeProtein85OpennessMedical SAM 2
932366—SAM2-based foundation model that segments 2D and 3D medical images by treating volumes and image sets as video object tracking.
Imaging74OpennessUSFM
3502—Ultrasound foundation model pretrained on over two million multi-organ images, transferring to segmentation, classification, and image enhancement.
Imaging22OpennessmoPPIt
14——De novo peptide binder design framework that targets specific motifs, including disordered regions and conserved epitopes, from target sequence alone.
Protein18OpennessscPRINT
15454—Single-cell foundation model pre-trained on 50 million cells for gene network inference, denoising, and cell type prediction.
Single-cell90OpennessChromatin-state language model pretrained on ROADMAP annotations from 127 human cell types to find chromatin-state motifs and predict gene expression.
DNA & Gene86Openness