All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 673696 of 943 models

  • Charité – Universitätsmedizin BerlinSeptember 11, 2024clinical_phenotypingcontrastive_learningcross_modal_retrieval+5

    Multimodal contrastive model aligning clinical EEG with free-text reports, enabling zero-shot EEG classification from natural-language prompts.

    BiosignalsLanguage model
    26Openness
  • CHIEF

    715539
    Harvard Medical School +2 othersSeptember 4, 2024cancer_detectionfoundation_modelhistology+8

    Weakly supervised histopathology foundation model pretrained on 60,530 whole-slide images for cancer detection, prognosis, and molecular prediction.

    Pathology
    15Openness
  • MaCo

    12
    Shanghai AI LaboratorySeptember 2, 2024chest_x_raycontrastive_learningfoundation_model+9

    Chest X-ray foundation model that pairs masked image modeling with image-report contrastive alignment for zero-shot diagnosis and phrase grounding.

    Imaging
    74Openness
  • HelixFold3

    1.1K
    Baidu PaddleHelixAugust 30, 2024biomoleculardiffusionstructure_prediction

    Open-source reproduction of AlphaFold 3 that predicts structures of proteins, DNA, RNA, and small-molecule ligands, including their mixed complexes.

    Protein
    14Openness
  • BELT-2

    12
    University of Technology SydneyAugust 28, 2024brain_to_textconformercontrastive_learning+6

    EEG-to-language foundation model that pairs a Q-Conformer encoder with a frozen LLM to decode coherent sentences from non-invasive brain recordings.

    BiosignalsLanguage model
    30Openness
  • Tsinghua UniversityAugust 27, 2024foundation_modelstructure_predictionvariant_effect_prediction

    End-to-end framework predicting protein structure and mutational fitness from a single sequence, with five-fold faster inference than ESMFold.

    Protein
    79Openness
  • NeuroLM

    163
    Shanghai Jiao Tong University +1 otherAugust 27, 2024eegeeg_decodingfoundation_model+7

    Multi-task EEG foundation model that treats brain signals as a foreign language, pairing a text-aligned neural tokenizer with a GPT-2 backbone.

    BiosignalsLanguage model
    66Openness
  • gLM2

    92484.7K
    Tatta Bio +4 othersAugust 17, 2024language_modelmetagenomicsmultimodal+3

    Mixed-modality genomic language model encoding protein coding sequences as amino acids and intergenic DNA as nucleotides in native genomic context.

    DNA & GeneProteinLanguage model
    58Openness
  • ECG-Chat

    8046
    China University of Geosciences +2 othersAugust 16, 2024cardiologycontrastive_learningdisease_classification+6

    Multimodal ECG-language model aligning 12-lead waveforms with clinical report text for conversational cardiac diagnosis and report generation.

    BiosignalsLanguage model
    27Openness
  • Georgia Institute of Technology +1 otherAugust 12, 2024cnncontrastive_learningfoundation_model+3

    Foundation model for photoplethysmography (PPG) that learns quality-robust waveform representations for heart rate, blood pressure, and AF detection.

    Biosignals
    36Openness
  • ECG-FM

    29795
    University of Toronto +1 otherAugust 9, 2024cardiologycontrastive_learningdisease_classification+6

    Open transformer foundation model for 12-lead electrocardiograms, pretrained on 1.5 million unlabeled ECGs with a wav2vec 2.0 self-supervised recipe.

    Biosignals
    67Openness
  • MuBind

    27
    Theis LabAugust 8, 2024chromatincnndna+7

    Deep learning model predicting single-cell read counts from DNA sequence features and cell transition graphs to identify transcriptional regulators.

    Single-cell
    59Openness
  • BiomedGPT

    7074011
    Lehigh University +9 othersAugust 7, 2024foundation_modelhistologyimage_captioning+7

    Open-source, lightweight generalist vision-language foundation model for diverse biomedical imaging and text tasks.

    Language modelImagingPathology
    33Openness
  • AnatCL

    1821
    University of Turin +1 otherAugust 7, 20243d_cnnbrain_age_predictionbrain_mri+7

    Brain MRI foundation model family pretrained with anatomically informed contrastive learning for diagnosis and clinical score prediction.

    Imaging
    71Openness
  • UC Santa Cruz +3 othersAugust 6, 2024foundation_modelhistologymultimodal+5

    Medical vision-language model trained on the MedTrinity-25M dataset, answering questions and generating text about radiology and histology images.

    Language modelPathology
    30Openness
  • MADELEINE

    6745
    Mahmood Lab +1 otherAugust 5, 2024contrastive_learninghistologymultimodal+1

    Slide-level pathology foundation model that learns whole-slide embeddings by aligning multiple stains of the same tissue during pretraining.

    Pathology
    42Openness
  • Google ResearchAugust 2, 2024chest_radiographycnncontrastive_learning+9

    Chest X-ray embedding model built on ELIXR, producing image and image-text embeddings for data-efficient and zero-shot radiograph classification.

    Imaging
  • PINNACLE

    1095
    Harvard UniversityAugust 1, 2024foundation_modelgraph_neural_networkprotein_protein_interaction+1

    Geometric deep learning model generating context-aware protein representations across 156 cell-type contexts from a multi-organ single-cell atlas.

    Single-cell
    83Openness
  • BioT5+

    127224
    Microsoft Research AsiaAugust 1, 2024drug_discoveryfoundation_modelsmall_molecule

    Text-to-text biological language model spanning molecules, proteins, and text, adding IUPAC names and multi-task instruction tuning to BioT5.

    Language modelSmall moleculeProtein
    85Openness
  • Medical SAM 2

    932366
    University of Oxford +1 otherAugust 1, 2024foundation_modelhistologyinteractive_segmentation+5

    SAM2-based foundation model that segments 2D and 3D medical images by treating volumes and image sets as video object tracking.

    Imaging
    74Openness
  • USFM

    3502
    Fudan UniversityAugust 1, 2024classificationfoundation_modelimage_restoration+4

    Ultrasound foundation model pretrained on over two million multi-organ images, transferring to segmentation, classification, and image enhancement.

    Imaging
    22Openness
  • moPPIt

    14
    Duke UniversityJuly 31, 2024binding_site_predictionflow_matchinggenerative+6

    De novo peptide binder design framework that targets specific motifs, including disordered regions and conserved epitopes, from target sequence alone.

    Protein
    18Openness
  • scPRINT

    15454
    Institut PasteurJuly 29, 2024foundation_modelgene_networktransformer

    Single-cell foundation model pre-trained on 50 million cells for gene network inference, denoising, and cell type prediction.

    Single-cell
    90Openness
  • University of TokyoJuly 25, 2024bertchromatinchromatin_state_modeling+7

    Chromatin-state language model pretrained on ROADMAP annotations from 127 human cell types to find chromatin-state motifs and predict gene expression.

    DNA & Gene
    86Openness