All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 1–9 of 9 filtered models

  • ReCLIP

    ———
    University of Chicago +2 othersJune 4, 2026multi_taskprotein_protein_interaction_predictionproteomics+4

    Transformer that predicts protein-protein interactions at residue resolution, spanning mutations, PTMs, peptide-MHC binding, and disease variants.

    Protein
    22Openness

  • GATSBI

    13——
    Stanford UniversityApril 3, 2026embeddingsfunction_predictiongraph_attention_network+4

    Graph attention model that learns context-aware protein embeddings from protein-protein interaction, co-expression, and tissue association networks.

    Protein
    94Openness

  • PPLM (Protein-Protein Language Model)

    615—
    National University of SingaporeMarch 10, 2026antibodybinding_affinity_predictionfoundation_model+6

    Paired-sequence protein language model that jointly encodes two interacting chains to predict interactions, binding affinity, and interface contacts.

    Protein
    27Openness

  • FlashPPI

    39143K
    Tatta BioMarch 1, 2026contrastive_learninginteraction_network_inferencemetagenomics+4

    Contrastive model built on a genomic language model that predicts physical protein-protein interactions across a microbial proteome in linear time.

    Protein
    14Openness

  • DynamicsPLM

    11——
    Technion – Israel Institute of Technology +1 otherOctober 6, 2025conformational_dynamicsenzyme_function_predictionlanguage_model+4

    Protein language model conditioned on ensembles of computed conformations, giving state-aware embeddings for interaction, localization, and function.

    Protein
    65Openness

  • ProteomeLM

    361243
    EPFLAugust 1, 2025foundation_modelgene_essentiality_predictionprotein_protein_interaction_prediction+4

    Proteome-scale protein language model whose representations enable zero-shot protein-protein interaction and gene essentiality prediction.

    Protein
    64Openness

  • PLMDA-PPI

    1032—
    Huazhong University of Science and TechnologyJuly 4, 2025graph_neural_networkinterface_contact_predictionprotein_protein_interaction+4

    Protein-protein interaction predictor that adds contact-guided dual attention and a geometric encoder to frozen protein language model embeddings.

    Protein
    77Openness

  • Shusi

    11—
    Zhejiang UniversityApril 27, 2025cancerfoundation_modelgraph_neural_network+3

    Single-cell foundation model inferring context-specific protein-protein interactions from cancer transcriptomes via a variational graph autoencoder.

    Single-cellProtein
    20Openness

  • gLM2

    92484.5K
    Tatta Bio +4 othersAugust 17, 2024language_modelmetagenomicsmultimodal+3

    Mixed-modality genomic language model encoding protein coding sequences as amino acids and intergenic DNA as nucleotides in native genomic context.

    DNA & GeneProteinLanguage model
    58Openness