All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 111 of 11 filtered models

  • GPFlow

    University of Illinois Urbana-ChampaignJuly 10, 2026flow_matchinggenerativemotif_scaffolding+4

    Variable-length generative protein design across structure, sequence, motif scaffolding, and peptide co-design via a generalized Poisson flow.

    Protein
    18Openness
  • Technical University of Denmark +5 othersJuly 9, 2026de_novo_designgenerative_adversarial_networkpeptide_design

    De novo design of MHC class I-binding peptides with a conditional GAN seeded by a photonic quantum processor, targeting understudied HLA alleles.

    Protein
    7Openness
  • Technical University of BerlinJune 2, 2026antimicrobial_peptidesbertde_novo_design+7

    Generative model for chemically modified and macrocyclic peptides that builds molecules in HELM notation, supporting de novo design and infilling.

    ProteinSmall molecule
    94Openness
  • TD3B

    2
    Duke UniversityMay 15, 2026de_novo_designdiffusionfine_tuning+4

    Sequence-based discrete-diffusion framework that designs peptide binders with specified agonist or antagonist behavior against GPCR targets.

    Protein
    10Openness
  • InversePep

    Keshav Memorial Engineering CollegeMarch 10, 2026diffusiongenerativegraph_neural_network+4

    Diffusion generative model for structure-based peptide inverse folding, pairing a geometric GNN encoder with a Transformer denoiser.

    Protein
    10Openness
  • ProtFlow

    2
    Zhejiang UniversityFebruary 17, 2026antimicrobial_peptidesde_novo_designflow_matching+4

    Flow-matching generative model for peptide sequence design that learns the protein semantic distribution, fine-tuned for antimicrobial peptides.

    Protein
    16Openness
  • Tsinghua UniversityFebruary 13, 2026chiralityde_novo_designdiffusion+5

    Latent diffusion model that designs D-peptide binders against native L-protein targets, generalizing across chirality via axial vector features.

    Protein
    67Openness
  • PepEDiff

    2
    University of CincinnatiJanuary 19, 2026de_novo_designdiffusiongenerative+6

    Zero-shot peptide binder designer that runs diffusion in a pretrained protein embedding space, proposing binders without structure prediction.

    Protein
    62Openness
  • Macao Polytechnic UniversityJanuary 12, 2026de_novo_designdiffusiongenerative+6

    Sequence-only latent diffusion model that designs target-specific peptide binders, cascaded with an affinity classifier through joint optimization.

    ProteinSmall molecule
    4Openness
  • SurfFlow

    Stanford UniversityJanuary 8, 2026de_novo_designflow_matchinggenerative+5

    Flow-matching model for therapeutic peptide design that co-designs sequence, structure, and molecular surface to disrupt protein-protein interactions.

    ProteinSmall molecule
    18Openness
  • PepBridge

    26
    University of Hamburg +1 otherNovember 8, 2025de_novo_designdiffusiongenerative+4

    Denoising diffusion bridge model for peptide binder design that generates ligand surfaces and backbones complementary to a target receptor surface.

    Protein
    70Openness