All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 1–11 of 11 filtered models
GPFlow
———Variable-length generative protein design across structure, sequence, motif scaffolding, and peptide co-design via a generalized Poisson flow.
Protein18Openness- Technical University of Denmark +5 othersJuly 9, 2026de_novo_designgenerative_adversarial_networkpeptide_design
De novo design of MHC class I-binding peptides with a conditional GAN seeded by a photonic quantum processor, targeting understudied HLA alleles.
Protein7Openness PepForge
41—Generative model for chemically modified and macrocyclic peptides that builds molecules in HELM notation, supporting de novo design and infilling.
ProteinSmall molecule94OpennessTD3B
—2—Sequence-based discrete-diffusion framework that designs peptide binders with specified agonist or antagonist behavior against GPCR targets.
Protein10OpennessInversePep
———Diffusion generative model for structure-based peptide inverse folding, pairing a geometric GNN encoder with a Transformer denoiser.
Protein10OpennessProtFlow
—2—Flow-matching generative model for peptide sequence design that learns the protein semantic distribution, fine-tuned for antimicrobial peptides.
Protein16OpennessPepMirror
61—Latent diffusion model that designs D-peptide binders against native L-protein targets, generalizing across chirality via axial vector features.
Protein67OpennessPepEDiff
2——Zero-shot peptide binder designer that runs diffusion in a pretrained protein embedding space, proposing binders without structure prediction.
Protein62OpennessSequence-only latent diffusion model that designs target-specific peptide binders, cascaded with an affinity classifier through joint optimization.
ProteinSmall molecule4OpennessSurfFlow
———Flow-matching model for therapeutic peptide design that co-designs sequence, structure, and molecular surface to disrupt protein-protein interactions.
ProteinSmall molecule18OpennessPepBridge
26——Denoising diffusion bridge model for peptide binder design that generates ligand surfaces and backbones complementary to a target receptor surface.
Protein70Openness