All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 193–216 of 217 filtered models
GenerRNA
1947—Transformer-based generative language model for de novo RNA design, pretrained on 16 million non-coding RNA sequences from RNAcentral.
RNA75OpennessDFMDock
557—Diffusion model for protein-protein docking that unifies pose sampling and energy-based ranking, works without MSAs, and generalizes to new targets.
Protein81OpennessmoPPIt
144—De novo peptide binder design framework that targets specific motifs, including disordered regions and conserved epitopes, from target sequence alone.
Protein18OpennessAlphaFlow-Lit
—13—Lightweight AlphaFlow variant that fine-tunes only AlphaFold's structure module, keeping the Evoformer frozen to cut conformational sampling cost.
Protein21OpennessscVI (CELLxGENE Census)
1.7K2.4K—Variational autoencoder pretrained on 74 million human single-cell transcriptomes from the CELLxGENE Census for batch correction and cell typing.
Single-cell96OpennessESM-3
2.9K31313.2KMultimodal generative protein language model reasoning jointly over protein sequence, structure, and function, trained at 98B parameters.
Protein27OpennessDistributional Graphormer
2.5K158—Deep learning framework predicting equilibrium distributions of molecular systems, enabling efficient ensemble generation and conformation sampling.
Protein46OpennessWalk-Jump Sampling
5758—Discrete generative model for antibody protein sequences combining MCMC walks on a smoothed energy landscape with one-step denoising jumps.
Protein60OpennessOpenCRISPR-1
1.2K80—AI-designed CRISPR-Cas9 gene editor generated by protein language models trained on 1.2 million CRISPR operons and shown to edit the human genome.
Protein16OpennessscMulan
626—Generative language model for single-cell transcriptomics with 368M parameters, unifying cell type annotation, batch integration, and cell generation.
Single-cell48OpennessscDiffusion
9465—Diffusion model for synthesizing single-cell RNA-seq data, with guided generation of specific cell types, rare cells, and developmental trajectories.
Single-cell60OpennessChroma
824——Diffusion model for programmable protein design that jointly samples structures and sequences, conditioned on symmetry, shape, or text prompts.
Protein53OpennessProGen2
705——Protein language models from 151M to 6.4B parameters, trained on over a billion sequences for sequence generation and zero-shot fitness prediction.
Protein55OpennessEvoDiff
675226—Discrete diffusion model for protein sequence and MSA generation, enabling controllable de novo design directly in sequence space without structure.
Protein84OpennessRadFM
561263—Radiology foundation model that reads interleaved 2D and 3D scans with text for diagnosis, visual question answering, and report generation.
ImagingLanguage model84OpennessMed-PaLM M
—552—Google's generalist multimodal biomedical AI that encodes clinical text, medical images, and genomics with a single set of weights across 14 tasks.
ImagingLanguage model25OpennessDNAGPT
46——GPT-style DNA foundation model trained on over 200 billion base pairs of mammalian genomes for sequence generation, classification, and regression.
DNA & Gene6OpennessscTranslator
978—Generative transformer that translates single-cell transcriptomes into proteomes, inferring missing protein abundance from RNA expression alone.
Single-cell33OpennessMedVInT
236367—Generative medical visual question answering model that pairs a vision encoder with a language model, trained on the 227k-pair PMC-VQA dataset.
PathologyLanguage model83OpennessRoentGen
88146—Text-conditioned latent diffusion model that generates synthetic chest X-rays from free-form radiology prompts by adapting Stable Diffusion.
ImagingLanguage model20OpennessBioGPT
4.5K1.5K101.4KGenerative transformer pretrained on PubMed abstracts for biomedical text generation and mining, including relation extraction and question answering.
Language model66OpennessProtGPT2
—8698.2KAutoregressive protein language model based on GPT-2 that generates de novo protein sequences sampling unexplored regions of protein space.
Protein54Openness