All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 121144 of 217 filtered models

  • EDEN

    4
    Basecamp ResearchJanuary 12, 2026de_novo_designfoundation_modelgenerative+5

    Metagenomic foundation model trained on 9.7 trillion nucleotide tokens for generative therapeutic design across genes, peptides, and microbiomes.

    DNA & GeneProtein
    13Openness
  • Northwestern Polytechnical UniversityJanuary 12, 2026aav_capsidde_novo_designdiffusion+5

    Diffusion model for de novo AAV capsid design that steers sampling with a viability classifier toward assemblable, packaging-competent variants.

    Protein
    5Openness
  • Seoul National University HospitalJanuary 12, 2026cancercell_type_annotationdata_generation+6

    Single-cell RNA-seq language model that treats cells as gene-expression tokens, synthesizing whole transcriptomes from tissue and disease metadata.

    Single-cellSpatial omics
    2Openness
  • Macao Polytechnic UniversityJanuary 12, 2026de_novo_designdiffusiongenerative+6

    Sequence-only latent diffusion model that designs target-specific peptide binders, cascaded with an affinity classifier through joint optimization.

    ProteinSmall molecule
    4Openness
  • SurfFlow

    6
    Stanford UniversityJanuary 8, 2026de_novo_designflow_matchinggenerative+5

    Flow-matching model for therapeutic peptide design that co-designs sequence, structure, and molecular surface to disrupt protein-protein interactions.

    ProteinSmall molecule
    18Openness
  • GEMGen

    2
    Westlake University +1 otherJanuary 3, 2026de_novo_designdrug_discoverygenerative+5

    Generative language model for phenotype-driven drug discovery, proposing small-molecule structures from up- and down-regulated gene signatures.

    Small moleculeSingle-cell
    9Openness
  • GenoME

    1
    Changping Laboratory +1 otherDecember 28, 2025chromatinepigenomicsfoundation_model+8

    Mixture-of-Experts generative model turning DNA sequence plus cell-type ATAC-seq into unified epigenomic, transcriptomic, and 3D chromatin profiles.

    DNA & GeneSingle-cell
    8Openness
  • Kitasato University +2 othersDecember 24, 2025codoncodon_optimizationfoundation_model+7

    GPT-style generative language model for mRNA coding sequences, pretrained across bacteria, eukaryotes, and archaea for de novo CDS design.

    RNA
    39Openness
  • FOCUS

    University of CambridgeDecember 23, 2025diffusionfoundation_modelgene_expression_imputation+8

    Generative foundation model that imputes genes and denoises spatial transcriptomics, conditioned on H&E histology, scRNA-seq, and spatial priors.

    Spatial omicsPathologySingle-cell
    4Openness
  • InstaDeep +4 othersDecember 22, 2025de_novo_designdnafoundation_model+5

    Multi-species genomics foundation model spanning representation learning, functional-track prediction, and sequence generation at 1 Mb context.

    DNA & Gene
    25Openness
  • ProFam

    582
    University College London +1 otherDecember 21, 2025de_novo_designgenerativelanguage_model+5

    Protein-family language model trained on unaligned homolog sets for zero-shot variant fitness prediction and design. ProFam-1 holds 251M parameters.

    Protein
    86Openness
  • PXDesign

    23825
    ByteDance SeedDecember 17, 2025binder_designde_novo_designdiffusion+4

    De novo protein binder design suite from ByteDance pairing diffusion and hallucination generators with confidence-based filtering of designs.

    Protein
    65Openness
  • HD-Prot

    74
    The Hong Kong Polytechnic University +2 othersDecember 17, 2025diffusiongenerativeinverse_folding+6

    Multimodal protein language model that adds a continuous-token diffusion head to a discrete pLM, modeling structure without vector quantization.

    Protein
    14Openness
  • SynPROTAC

    Sun Yat-sen UniversityDecember 12, 2025de_novo_designdrug_discoverygenerative+3

    Designs synthesizable PROTAC degraders from reaction templates and purchasable building blocks, with reinforcement learning tuning the generator.

    Small molecule
    11Openness
  • ProteinEBM

    7
    MITDecember 9, 2025conformational_dynamicsconformational_samplingdiffusion+5

    Energy-based model of protein conformational space, turning a diffusion model into a statistical potential for structure ranking and mutation scoring.

    Protein
    8Openness
  • OMTRA

    68
    University of Pittsburgh +1 otherDecember 4, 2025conformer_generationde_novo_designdrug_discovery+8

    Structure-based drug design model that unifies de novo generation, docking, conformer generation, and pharmacophore conditioning via flow matching.

    Small moleculeProtein
    72Openness
  • TriFlow

    9
    University of Chicago +1 otherDecember 2, 2025de_novo_designflow_matchinggenerative+4

    Structure-conditioned protein sequence design, pairing a three-track architecture with discrete flow matching for fast, few-step inverse folding.

    Protein
    69Openness
  • gRNAde

    310321
    MRC Laboratory of Molecular Biology +1 otherDecember 1, 2025de_novo_designgenerativegraph_neural_network+5

    RNA inverse-folding model that generates sequences predicted to fold into a target 3D backbone, capturing non-canonical pairs and tertiary motifs.

    RNA
    98Openness
  • RadDiff

    Nanjing UniversityNovember 28, 2025diffusiongenerativegraph_neural_network+3

    Retrieval-augmented diffusion model for protein inverse folding that conditions sequence generation on profiles from structurally similar homologs.

    Protein
    27Openness
  • Carnegie Mellon UniversityNovember 27, 2025gene_expressiongenerativelanguage_model+4

    Spatial transcriptomics language model that reads tissue as spatial sentences to simulate cell profiles and run in silico perturbations.

    Spatial omicsSingle-cell
    53Openness
  • BoltzGen

    1K80
    MITNovember 24, 2025antibodybinder_designde_novo_design+5

    All-atom generative model for de novo protein and peptide binder design against diverse biomolecular targets, wet-lab validated across 26 targets.

    ProteinSmall molecule
    78Openness
  • University of Maryland, College ParkNovember 24, 2025codon_optimizationde_novo_designfoundation_model+6

    Conditional codon language model with 150M parameters that generates species-optimized coding sequences from a protein and its taxonomic lineage.

    DNA & GeneRNA
    90Openness
  • Micellangelo

    Eindhoven University of TechnologyNovember 24, 2025cell_biologycell_morphology_simulationconditional_generation+5

    Flow-matching generative model that synthesizes fluorescence images of human fibroblasts conditioned on surface micro-topographies.

    Imaging
    5Openness
  • MIMYR

    2
    Carnegie Mellon UniversityNovember 24, 2025cell_biologycell_type_annotationdata_imputation+6

    Generative framework that reconstructs missing spatial transcriptomics regions by jointly predicting cell locations, cell types, and gene expression.

    Spatial omicsSingle-cell
    16Openness