Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 481–504 of 2565 models
Autoregressive nucleotide-and-text foundation model generating DNA and RNA sequences from natural-language prompts that name species and function.
Pathology foundation model that infers spatial transcriptomics and proteomics directly from routine H&E whole-slide images, with no spatial assay.
Single-cell foundation model that tokenizes scRNA-seq into 10 tokens in a Qwen3-4B vocabulary for cell type annotation and perturbation prediction.
Transcriptome foundation model for precision oncology, generalizing zero-shot across tissue, plasma cfRNA, and tumor-educated platelet modalities.
Genomic foundation model for rice, pretrained on 422 Oryza genomes with a 1 Mbp context window and a 1.25B-parameter mixture-of-experts transformer.
Long-context RNA foundation model that predicts splicing, isoform abundance, and variant effects from 64 kb of unspliced pre-mRNA sequence.
Peptide-protein interaction prediction that scores a pair and maps the interface residues on both the peptide and the protein from sequence alone.
Chemical language model that generates matched molecular pair transformations from SMILES and SMARTS to design medicinal-chemistry analogs.
Single-pass RNA inverse folding: a graph neural network predicts a nucleotide sequence from a target 3D backbone in constant time.
Diffusion-based RNA inverse folding, denoising toward a nucleotide sequence conditioned on a target 3D backbone for higher native sequence recovery.
Protein function prediction model that fuses sequence, structure, text, and interaction embeddings with learned gating to assign Gene Ontology terms.
Schrödinger-bridge diffusion model for virtual multiplex staining, translating routine H&E histology into multiplex immunohistochemistry images.
Chemical language models pretrained on SMILES for therapeutic peptides, natively representing non-canonical residues, cyclization, and conjugation.
Contrastive dual-encoder model for DIA proteomics, embedding peptides and spectra in a shared space for zero-shot peptide-spectrum matching.
Molecular linker design model fine-tuned from Llama 3 that emits PROTAC and fragment linkers as SMILES from natural-language geometry prompts.
Protein model accuracy estimation returning a complex fold score and an interface score from a single structure, with no candidate pool required.
OpenAI's frontier reasoning model for life-sciences research, tuned for multi-step workflows in protein engineering, genomics, and drug discovery.
Encoder-decoder Transformer that generates intrinsically disordered protein sequences conditioned on target conformational-ensemble descriptors.
Generative pipeline for epitope-targeted de novo antibody (nanobody) CDR design that yields nanomolar binders from only dozens of designs per antigen.
Transcriptomics-native single-cell foundation model that learns batch-invariant cell representations and probabilistically generates virtual cells.
Generative DNA foundation model trained on 91.7M nucleotide sequences and annotations for species classification and mutation effect prediction.
Single-cell multiomic foundation model that transfers pan-cancer RNA-ATAC regulatory structure into RNA-only tumour datasets via low-rank adapters.
Autoregressive language model trained on 37 million intrinsically disordered region sequences, generating IDRs given flanking folded domains.