Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 481–504 of 2336 models
Graph-transformer foundation model pretrained on 3M protein pockets and 5M molecules as E(3)-equivariant graphs for protein-ligand representation.
Multimodal foundation model pretrained on ~500K unlabeled PubChem molecules that jointly predicts nine thermophysical properties of small molecules.
Large language model trained on functional genomics data to prioritize novel therapeutic targets from genome-wide CRISPR knockout screens.
Contrastive antibody language model predicting antibody-antigen binding specificity from sequence with a dual-encoder, cross-attentive architecture.
Temporal diffusion framework for single-cell developmental dynamics, interpolating and forecasting cell states from irregularly sampled time series.
Knowledge-graph-grounded model that predicts single-cell transcriptomic responses to small molecules, with zero-shot prediction for unprofiled drugs.
Foundation model for 3D genome architecture, using masked locus modeling over genome-wide contact profiles to capture chromosome-scale organization.
Multimodal deep learning model that predicts protein-mediated chromatin contact maps and loops de novo from protein-binding profiles and sequence.
Longitudinal chest X-ray vision-language model that reads a follow-up radiograph against its prior study and forecasts how findings will change.
Polarizable machine-learning interatomic potential extending MACE with long-range electrostatics, trained on 100M OMol25 DFT calculations.
Knowledge-graph foundation model for drug repurposing, grounding a biomedical graph in cell-type-specific genetic associations to rank indications.
RNA subcellular localization predictor that fuses physicochemical interaction graphs with frozen RiNALMo embeddings via a gated fusion layer.
Plant genomic foundation models from 0.1B to 1B parameters, pretrained on 43 phylogenetically diverse plant genomes for variant effect prediction.
Diffusion model predicting single-cell responses to genetic or drug perturbations, generating over distributions to capture population variability.
Enzyme function prediction model that uses contrastive learning to assign the first three EC digits to enzymes with functions unseen during training.
Protein-ligand binding affinity scorer using an SE(3)-equivariant graph network trained on 741,706 co-folded complexes with target-disjoint splits.
Conditional variational autoencoder for antimicrobial peptide design that disentangles sequence, function, and length for independent control.
Prime editing efficiency prediction from pegRNA sequence, with every biochemical step of the editing mechanism modeled as its own learned rate.
Protein evolution model that learns indel dynamics and epistasis from unaligned sequences, simulating trajectories that yield functional proteins.
Single-cell foundation model applying discrete diffusion directly to scRNA-seq counts, generating unconditional and perturbation-conditioned profiles.
Healthcare reasoning model for symptom triage, wellness planning, and clinical workflows, post-trained with rubric-based reinforcement learning.