All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 481504 of 943 models

  • BioVERSE

    2
    IBM ResearchOctober 1, 2025cell_biologycell_type_annotationcross_modal_question_answering+5

    Multimodal biomedical framework aligning frozen single-cell and protein model encoders to an LLM's embedding space for zero-shot reasoning.

    Language modelSingle-cellProtein
    23Openness
  • GCP-VQVAE

    432
    University of MissouriOctober 1, 2025graph_neural_networkprotein_structurerepresentation_learning+4

    Protein structure tokenizer that maps 3D backbones to discrete tokens with an SE(3)-equivariant encoder preserving orientation and chirality.

    Protein
    86Openness
  • Institute of Science and Technology Austria +1 otherOctober 1, 2025cell_paintingdiffusiongenerative+4

    Diffusion model for multichannel fluorescent cell microscopy, generating morphologically plausible images aligned to OpenPhenom phenotypic embeddings.

    ImagingSingle-cell
    22Openness
  • PathQC

    1
    Sanford Burnham PrebysOctober 1, 2025biobankinghistologyquality_control+4

    Pan-tissue quality-control model that predicts RNA integrity and autolysis from H&E whole-slide images using frozen UNI foundation model embeddings.

    Pathology
    25Openness
  • Scooby

    6912530
    Technical University of Munich +4 othersOctober 1, 2025chromatinchromatin_accessibility_predictionconvolutional_neural_network+5

    Predicts single-cell scRNA-seq coverage and scATAC-seq insertion profiles from DNA sequence, adapting the Borzoi trunk with a cell-specific decoder.

    Single-cell
    70Openness
  • Caliby

    1074
    Stanford UniversitySeptember 30, 2025generativeinverse_foldingpotts_model+1

    Potts-model inverse folding that conditions on a structural ensemble rather than a single backbone, improving designability and self-consistency.

    Protein
    72Openness
  • Shanghai AI LaboratorySeptember 25, 2025foundation_modelmultimodalprotein_function_prediction+2

    Multimodal scientific foundation model unifying protein, DNA/RNA, and small-molecule structure in one token vocabulary for cross-domain reasoning.

    ProteinDNA & GeneSmall molecule
    66Openness
  • ETH ZurichSeptember 23, 2025cancerdeep_setsgene_expression_prediction+4

    Predicts virtual single-cell spatial transcriptomics from H&E histology using frozen pathology foundation models and spot-level supervision.

    PathologySpatial omics
    58Openness
  • NeuroRAD-FM

    Stony Brook University +1 otherSeptember 18, 2025cnnfoundation_modelmolecular_subtyping+6

    Neuro-oncology foundation model for brain tumor MRI, using distributionally robust pretraining for molecular subtyping and survival prediction.

    Imaging
    23Openness
  • McGill University +1 otherSeptember 12, 2025brain_mricnncontrastive_learning+7

    Self-supervised foundation model for 3D brain MRI, learning transferable anatomical representations from unlabeled scans for disease classification.

    Imaging
    74Openness
  • Huazhong University of Science and TechnologySeptember 3, 2025cryo_emcryo_etimage_restoration+4

    Cryo-EM and cryo-ET map enhancement model that sharpens density maps with a Mamba-based dual-branch UNet and local resolution-guided learning.

    Imaging
    54Openness
  • EiRA

    2
    Hunan UniversitySeptember 2, 2025binder_designdnagenerative+6

    Protein binder design model post-trained from a multimodal protein language model to bind proteins, peptides, small molecules, and nucleic acids.

    Protein
    13Openness
  • BrainFM

    208
    Johns Hopkins University +4 othersAugust 30, 2025foundation_modelimage_synthesismulti_task+4

    Modality-agnostic foundation model for human brain imaging that runs five core neuroimaging tasks across uncalibrated CT and MRI without retraining.

    Imaging
    75Openness
  • OwkinZero

    1
    OwkinAugust 22, 2025drug_discoveryfoundation_modelreinforcement_learning+2

    Biological reasoning language model that post-trains Qwen3 with reinforcement learning from verifiable rewards for drug-discovery tasks.

    Language model
    15Openness
  • scYeast

    51
    Shanghai Jiao Tong UniversityAugust 20, 2025cell_type_annotationfoundation_modeltransformer+1

    Single-cell foundation model for yeast that injects regulatory network priors into transformer attention for zero-shot and fine-tuned analysis.

    Single-cell
    68Openness
  • rBio

    14616
    Chan Zuckerberg InitiativeAugust 18, 2025cell_biologyfoundation_modelreinforcement_learning+2

    Reasoning language model post-trained on virtual cell simulations, answering questions about gene perturbations and their effects in natural language.

    Language model
    60Openness
  • Broad InstituteAugust 17, 2025chromatinfoundation_modelgene_regulation+7

    Multimodal foundation model predicting genome-wide binding of chromatin-associated proteins from protein sequence, DNA sequence, and chromatin state.

    DNA & GeneProtein
    25Openness
  • Earth Species ProjectAugust 15, 2025beatsbioacousticsfoundation_model+4

    Self-supervised bioacoustic audio encoder that turns animal-sound recordings into transferable embeddings for species classification and detection.

    Biosignals
    59Openness
  • Central South UniversityAugust 11, 2025foundation_modelgene_expression_predictionhistology+6

    Histology vision transformer with 80M parameters that predicts spatial gene expression from H&E tissue images and transfers to tumor detection.

    PathologySpatial omics
    59Openness
  • CLASP

    44
    McGill UniversityAugust 10, 2025contrastive_learningcross_modal_retrievalgraph_neural_network+7

    Tri-modal contrastive model aligning protein structure, sequence, and text in a shared space for zero-shot cross-modal retrieval and classification.

    Protein
    42Openness
  • University of Science and Technology of ChinaAugust 7, 2025bertfoundation_modellanguage_model+8

    RNA foundation model pretrained jointly on sequences and secondary structures for structure prediction, homology and splice site classification.

    RNA
    92Openness
  • PoET-2

    2710
    OpenProtein.AIAugust 5, 2025foundation_modellanguage_modelprotein_design+5

    Multimodal, retrieval-augmented protein foundation model that learns family-specific evolutionary constraints with optional structure conditioning.

    Protein
    37Openness
  • OpenMed NER

    4.7K2
    OpenMedAugust 3, 2025biomedical_literatureinformation_extractionnamed_entity_recognition+2

    Biomedical named entity recognition transformers, with task-specialized checkpoints for chemicals, diseases, genes, proteins, species, and anatomy.

    Language model
    71Openness
  • EPFLAugust 1, 2025foundation_modelgene_essentiality_predictionprotein_protein_interaction_prediction+4

    Proteome-scale protein language model whose representations enable zero-shot protein-protein interaction and gene essentiality prediction.

    Protein
    64Openness