All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 481–504 of 943 models
BioVERSE
—2—Multimodal biomedical framework aligning frozen single-cell and protein model encoders to an LLM's embedding space for zero-shot reasoning.
Language modelSingle-cellProtein23OpennessGCP-VQVAE
432—Protein structure tokenizer that maps 3D backbones to discrete tokens with an SE(3)-equivariant encoder preserving orientation and chirality.
Protein86OpennessMorphGen
74—Institute of Science and Technology Austria +1 otherOctober 1, 2025cell_paintingdiffusiongenerative+4Diffusion model for multichannel fluorescent cell microscopy, generating morphologically plausible images aligned to OpenPhenom phenotypic embeddings.
ImagingSingle-cell22OpennessPathQC
1——Pan-tissue quality-control model that predicts RNA integrity and autolysis from H&E whole-slide images using frozen UNI foundation model embeddings.
Pathology25OpennessScooby
6912530Technical University of Munich +4 othersOctober 1, 2025chromatinchromatin_accessibility_predictionconvolutional_neural_network+5Predicts single-cell scRNA-seq coverage and scATAC-seq insertion profiles from DNA sequence, adapting the Borzoi trunk with a cell-specific decoder.
Single-cell70OpennessCaliby
1074—Potts-model inverse folding that conditions on a structural ensemble rather than a single backbone, improving designability and self-consistency.
Protein72OpennessSciReasoner
90—46Multimodal scientific foundation model unifying protein, DNA/RNA, and small-molecule structure in one token vocabulary for cross-domain reasoning.
ProteinDNA & GeneSmall molecule66OpennessDeepSpot2Cell
142—Predicts virtual single-cell spatial transcriptomics from H&E histology using frozen pathology foundation models and spot-level supervision.
PathologySpatial omics58OpennessNeuroRAD-FM
———Neuro-oncology foundation model for brain tumor MRI, using distributionally robust pretraining for molecular subtyping and survival prediction.
Imaging23Openness3D-Neuro-SimCLR
912—Self-supervised foundation model for 3D brain MRI, learning transferable anatomical representations from unlabeled scans for disease classification.
Imaging74OpennessEMReady2
13—Cryo-EM and cryo-ET map enhancement model that sharpens density maps with a Mamba-based dual-branch UNet and local resolution-guided learning.
Imaging54OpennessEiRA
—2—Protein binder design model post-trained from a multimodal protein language model to bind proteins, peptides, small molecules, and nucleic acids.
Protein13OpennessBrainFM
208—Modality-agnostic foundation model for human brain imaging that runs five core neuroimaging tasks across uncalibrated CT and MRI without retraining.
Imaging75OpennessscYeast
51—Single-cell foundation model for yeast that injects regulatory network priors into transformer attention for zero-shot and fine-tuned analysis.
Single-cell68OpennessrBio
14616—Reasoning language model post-trained on virtual cell simulations, answering questions about gene perturbations and their effects in natural language.
Language model60OpennessChromnitron
261—Multimodal foundation model predicting genome-wide binding of chromatin-associated proteins from protein sequence, DNA sequence, and chromatin state.
DNA & GeneProtein25OpennessAVES2-BEATs
396—Self-supervised bioacoustic audio encoder that turns animal-sound recordings into transferable embeddings for species classification and detection.
Biosignals59OpennessHistology vision transformer with 80M parameters that predicts spatial gene expression from H&E tissue images and transfers to tumor detection.
PathologySpatial omics59OpennessCLASP
44—Tri-modal contrastive model aligning protein structure, sequence, and text in a shared space for zero-shot cross-modal retrieval and classification.
Protein42OpennessstructRFM
36331RNA foundation model pretrained jointly on sequences and secondary structures for structure prediction, homology and splice site classification.
RNA92OpennessPoET-2
2710—Multimodal, retrieval-augmented protein foundation model that learns family-specific evolutionary constraints with optional structure conditioning.
Protein37OpennessOpenMed NER
4.7K2—Biomedical named entity recognition transformers, with task-specialized checkpoints for chemicals, diseases, genes, proteins, species, and anatomy.
Language model71OpennessProteomeLM
363243EPFLAugust 1, 2025foundation_modelgene_essentiality_predictionprotein_protein_interaction_prediction+4Proteome-scale protein language model whose representations enable zero-shot protein-protein interaction and gene essentiality prediction.
Protein64Openness