All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 25–48 of 76 filtered models
Cryo-ET particle picking model that averages tiny, medium, and large 3D U-Nets pretrained on simulated tomograms and fine-tuned on experimental data.
Imaging86OpennessCellpose 3
2.3K385—Generalist cell segmentation pairing the cyto3 super-generalist model with one-click networks that denoise, deblur, and upsample microscopy images.
Imaging65OpennessMonjuDetectHM
211—Cryo-ET particle picking ensemble of three 3D segmentation models predicting particle-center heatmaps with ResNet50d and EfficientNetV2-M backbones.
Imaging95OpennessTopCUP
3——Cryo-ET particle picking model, an ensemble of 3D U-Nets with EfficientNet encoders that finds protein complexes in tomograms by heatmap segmentation.
Imaging96OpennessBPD
2——Cryo-ET particle picking model that localizes six protein complexes in tomograms using an ensemble of lightweight 3D U-Nets.
Imaging67OpennessMedicoSAM
319—Segment Anything Model finetuned on diverse medical images, giving a reusable promptable checkpoint for interactive and automatic image segmentation.
Imaging77OpennessBrainfound
—4—Tsinghua University +2 othersJanuary 10, 2025contrastive_learningcross_modality_translationdiffusion+9Multimodal vision-text foundation model for brain CT and MRI, pretrained on roughly 10 million image-report pairs to act as a clinical copilot.
ImagingLanguage model7OpennessSABER
18——Cryo-ET segmentation framework adapting SAM2 to vesicles and membrane-bound compartments in tomograms and 2D micrographs, zero-shot or fine-tuned.
Imaging78OpennessOctopi
13——Cryo-ET particle picking model that localizes and classifies multiple protein complexes in a tomogram with a single 3D U-Net forward pass.
Imaging81OpennessUltraSam
13633—Promptable ultrasound image segmentation foundation model, a SAM adaptation trained on US-43d, the largest public ultrasound segmentation corpus.
Imaging26OpennessBiomedParse
686170548Biomedical imaging foundation model that segments, detects, and recognizes structures across nine modalities from natural language prompts.
Imaging60OpennessSpark3D (S3D)
1573936Masked-autoencoder foundation model that pre-trains a 3D Residual Encoder U-Net on roughly 39,000 brain MRIs for volumetric image segmentation.
Imaging45OpennessSS-CXR
—13—Children's National Hospital +2 othersOctober 27, 2024disease_classificationfoundation_modelradiology+3Self-supervised vision transformer pretrained on chest X-rays to produce a domain-specific foundation model for classification and lung segmentation.
Imaging22OpennessgCIS
109—CT segmentation foundation model that uses task prompts to segment 83 anatomical structures and lesions across whole-body scans in a single network.
Imaging14OpennessMaCo
1276—Chest X-ray foundation model that pairs masked image modeling with image-report contrastive alignment for zero-shot diagnosis and phrase grounding.
Imaging74OpennessMedical SAM 2
933257—SAM2-based foundation model that segments 2D and 3D medical images by treating volumes and image sets as video object tracking.
Imaging74OpennessUSFM
350112—Ultrasound foundation model pretrained on over two million multi-organ images, transferring to segmentation, classification, and image enhancement.
Imaging22OpennessScribblePrompt
22066—Interactive foundation model for biomedical image segmentation, prompted with scribbles, clicks, and bounding boxes to segment unseen structures.
Imaging63OpennessCryoViT
125—Semi-supervised cryo-ET segmentation framework that adapts DINOv2 vision transformers for 3D organelle annotation using sparse 2D slice labels.
Imaging45OpennessHEST Tissue Segmentation
422161—DeepLabV3 segmentation model that separates tissue from glass background in H&E and IHC whole-slide images, as used by the HEST-Library.
Pathology11OpennessBrainSegFounder
1575—3D vision-transformer foundation model for multimodal neuroimage segmentation, pretrained self-supervised on brain MRI from 41,400 participants.
Imaging51OpennessCytoland
1029—Virtual staining models that translate label-free light microscopy into fluorescent-equivalent predictions of nuclei and plasma membranes.
Imaging99Openness