All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 2548 of 76 filtered models

  • Chan Zuckerberg InitiativeFebruary 1, 2025cnncryo_etparticle_picking+3

    Cryo-ET particle picking model that averages tiny, medium, and large 3D U-Nets pretrained on simulated tomograms and fine-tuned on experimental data.

    Imaging
    86Openness
  • Cellpose 3

    2.3K385
    HHMI Janelia Research CampusFebruary 1, 2025cell_biologygeneralist_modelimage_restoration+2

    Generalist cell segmentation pairing the cyto3 super-generalist model with one-click networks that denoise, deblur, and upsample microscopy images.

    Imaging
    65Openness
  • Chan Zuckerberg InitiativeFebruary 1, 2025cnncryo_etparticle_picking+3

    Cryo-ET particle picking ensemble of three 3D segmentation models predicting particle-center heatmaps with ResNet50d and EfficientNetV2-M backbones.

    Imaging
    95Openness
  • TopCUP

    3
    Chan Zuckerberg InitiativeFebruary 1, 2025cnncryo_etparticle_picking+3

    Cryo-ET particle picking model, an ensemble of 3D U-Nets with EfficientNet encoders that finds protein complexes in tomograms by heatmap segmentation.

    Imaging
    96Openness
  • BPD

    2
    Chan Zuckerberg InitiativeFebruary 1, 2025cnncryo_etparticle_picking+3

    Cryo-ET particle picking model that localizes six protein complexes in tomograms using an ensemble of lightweight 3D U-Nets.

    Imaging
    67Openness
  • MedicoSAM

    319
    Computational Cell AnalyticsJanuary 20, 2025foundation_modelinteractive_annotationmedical_imaging+4

    Segment Anything Model finetuned on diverse medical images, giving a reusable promptable checkpoint for interactive and automatic image segmentation.

    Imaging
    77Openness
  • Brainfound

    4
    Tsinghua University +2 othersJanuary 10, 2025contrastive_learningcross_modality_translationdiffusion+9

    Multimodal vision-text foundation model for brain CT and MRI, pretrained on roughly 10 million image-report pairs to act as a clinical copilot.

    ImagingLanguage model
    7Openness
  • SABER

    18
    Chan Zuckerberg InitiativeJanuary 1, 2025cryo_etfoundation_modelsegmentation+3

    Cryo-ET segmentation framework adapting SAM2 to vesicles and membrane-bound compartments in tomograms and 2D micrographs, zero-shot or fine-tuned.

    Imaging
    78Openness
  • Octopi

    13
    Chan Zuckerberg InitiativeJanuary 1, 2025cnncryo_etparticle_picking+3

    Cryo-ET particle picking model that localizes and classifies multiple protein complexes in a tomogram with a single 3D U-Net forward pass.

    Imaging
    81Openness
  • MedPLIB

    1343910
    Baidu +3 othersDecember 12, 2024histologymedical_image_groundingmixture_of_experts+8

    Biomedical multimodal LLM that answers questions about medical images and returns pixel-level segmentation masks, using a mixture-of-experts design.

    ImagingLanguage model
    80Openness
  • UltraSam

    13633
    University of StrasbourgNovember 25, 2024foundation_modelimage_classificationsegmentation+3

    Promptable ultrasound image segmentation foundation model, a SAM adaptation trained on US-43d, the largest public ultrasound segmentation corpus.

    Imaging
    26Openness
  • BiomedParse

    686170548
    Microsoft ResearchNovember 18, 2024foundation_modelmedical_imagingmultimodal+4

    Biomedical imaging foundation model that segments, detects, and recognizes structures across nine modalities from natural language prompts.

    Imaging
    60Openness
  • German Cancer Research Center (DKFZ) +5 othersOctober 30, 2024brain_mricnnfoundation_model+7

    Masked-autoencoder foundation model that pre-trains a 3D Residual Encoder U-Net on roughly 39,000 brain MRIs for volumetric image segmentation.

    Imaging
    45Openness
  • SS-CXR

    13
    Children's National Hospital +2 othersOctober 27, 2024disease_classificationfoundation_modelradiology+3

    Self-supervised vision transformer pretrained on chest X-rays to produce a domain-specific foundation model for classification and lung segmentation.

    Imaging
    22Openness
  • gCIS

    109
    United Imaging Intelligence +1 otherOctober 14, 2024ct_imagingfoundation_modellesion_detection+4

    CT segmentation foundation model that uses task prompts to segment 83 anatomical structures and lesions across whole-body scans in a single network.

    Imaging
    14Openness
  • MaCo

    1276
    Shanghai AI LaboratorySeptember 2, 2024chest_x_raycontrastive_learningfoundation_model+9

    Chest X-ray foundation model that pairs masked image modeling with image-report contrastive alignment for zero-shot diagnosis and phrase grounding.

    Imaging
    74Openness
  • Medical SAM 2

    933257
    University of Oxford +1 otherAugust 1, 2024foundation_modelhistologyinteractive_segmentation+5

    SAM2-based foundation model that segments 2D and 3D medical images by treating volumes and image sets as video object tracking.

    Imaging
    74Openness
  • USFM

    350112
    Fudan UniversityAugust 1, 2024classificationfoundation_modelimage_restoration+4

    Ultrasound foundation model pretrained on over two million multi-organ images, transferring to segmentation, classification, and image enhancement.

    Imaging
    22Openness
  • MIT CSAIL +1 otherJuly 16, 2024cnnfoundation_modelinteractive_segmentation+5

    Interactive foundation model for biomedical image segmentation, prompted with scribbles, clicks, and bounding boxes to segment unseen structures.

    Imaging
    63Openness
  • CryoViT

    125
    Stanford UniversityJune 30, 2024cryo_etelectron_tomographyfoundation_model+3

    Semi-supervised cryo-ET segmentation framework that adapts DINOv2 vision transformers for 3D organelle annotation using sparse 2D slice labels.

    Imaging
    45Openness
  • Mahmood LabJune 23, 2024cnnhistologyimage_preprocessing+2

    DeepLabV3 segmentation model that separates tissue from glass background in H&E and IHC whole-slide images, as used by the HEST-Library.

    Pathology
    11Openness
  • University of Florida +1 otherJune 14, 2024foundation_modellesion_segmentationmri+7

    3D vision-transformer foundation model for multimodal neuroimage segmentation, pretrained self-supervised on brain MRI from 41,400 participants.

    Imaging
    51Openness
  • VISTA3D

    292776.6K
    NVIDIAJune 7, 2024cnnctfoundation_model+5

    Medical image segmentation foundation model for 3D CT and MRI, covering 127 anatomical classes automatically plus interactive point-prompt refinement.

    Imaging
    73Openness
  • Cytoland

    1029
    Chan Zuckerberg Biohub +1 otherJune 3, 2024cell_biologyimage_translationmicroscopy+3

    Virtual staining models that translate label-free light microscopy into fluorescent-equivalent predictions of nuclei and plasma membranes.

    Imaging
    99Openness