Research Institute

HHMI Janelia Research Campus

Howard Hughes Medical Institute research campus for neuroscience and imaging

Location: Ashburn, VA
Website
4 models

Models (4)

Cellpose-SAM

HHMI Janelia Research Campus

Released May 1, 2025

1492.2K

Generalist cell segmentation model combining SAM's ViT-L backbone with Cellpose flow fields. First model to surpass average human annotators on the Cellpose benchmark.

Imaging

Cellpose 3

HHMI Janelia Research Campus

Released February 1, 2025

3202.2K

Generalist cell segmentation framework with a super-generalist cyto3 model and one-click image restoration networks optimized for downstream segmentation quality.

Imaging

Cellpose 2.0

HHMI Janelia Research Campus

Released October 3, 2022

1.1K2.2K

Human-in-the-loop cell segmentation framework enabling custom model training from as few as 100-200 corrected annotations.

Imaging

Cellpose

HHMI Janelia Research Campus

Released December 7, 2020

3.4K2.2K

Generalist deep learning algorithm for cell and nucleus instance segmentation using simulated diffusion flows, without per-dataset retraining.

Imaging