Research Institute

HHMI Janelia Research Campus

An HHMI research campus in Virginia where tool builders and neuroscientists work in teams to invent the technologies that decode the brain.

Location: Ashburn, VA
Website
4 models

Models (4)

Cellpose-SAM

HHMI Janelia Research Campus

Released May 1, 2025

1912.3K

Generalist cell segmentation model pairing SAM's ViT-L encoder with Cellpose flow fields, outperforming average human annotators on its benchmark.

Imaging

Cellpose 3

HHMI Janelia Research Campus

Released February 1, 2025

3832.3K

Generalist cell segmentation pairing the cyto3 super-generalist model with one-click networks that denoise, deblur, and upsample microscopy images.

Imaging

Cellpose 2.0

HHMI Janelia Research Campus

Released October 3, 2022

1.1K2.3K

Human-in-the-loop cell segmentation framework enabling custom model training from as few as 100-200 corrected annotations.

Imaging

Cellpose

HHMI Janelia Research Campus

Released December 7, 2020

3.6K2.3K

Generalist deep learning algorithm for cell and nucleus instance segmentation using simulated diffusion flows, without per-dataset retraining.

Imaging