All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 1–24 of 70 filtered models
Emap2lig
1——A two-stage deep learning framework that detects ligand densities in cryo-EM maps and reconstructs their atomic structures with a diffusion generative model.
ImagingSmall molecule25OpennessA domain-specific foundation model for zero-shot plant root image segmentation, built on a MobileSAM backbone and trained across nine diverse root datasets.
Imaging74OpennessBrainDINO
3——Emory University +2 othersApril 30, 2026brain_age_estimationdisease_classificationfoundation_model+6A self-supervised DINOv3-based foundation model for brain MRI, pretrained on ~6.6M unlabeled axial slices and transferable to diverse neuroimaging tasks.
Imaging49OpennessmnDINO
———A DINO-pretrained vision transformer for accurate, robust segmentation of micronuclei in DNA-stained fluorescence microscopy across cell lines and instruments.
Imaging32OpennessMerlin
41912712.5KA 3D vision-language foundation model for abdominal CT that pretrains on paired scans, radiology reports, and structured EHR codes for zero-shot interpretation.
ImagingLanguage model54OpennessSpatialDINO
—1—A native 3D vision transformer self-supervised on unlabeled fluorescence microscopy volumes that generalizes to unseen object classes without retraining or voxel annotations.
Imaging8OpennessMIMO
1223—A medical vision-language model that accepts visual-referring multimodal input and produces pixel-grounded multimodal output, jointly answering and segmenting medical images.
ImagingLanguage model11OpennessBrainFM
176—A modality-agnostic, multi-task foundation model for human brain imaging that runs five core tasks across uncalibrated CT and MRI without retraining.
Imaging75OpennessRadiologyNET
57—A family of CNN foundation models pretrained on ~1.9M multimodal radiology images for transfer learning across medical imaging tasks.
Imaging53OpennessCellpose-SAM
2.2K152—Generalist cell segmentation model combining SAM's ViT-L backbone with Cellpose flow fields. First model to surpass average human annotators on the Cellpose benchmark.
Imaging50OpennessSAM-Brain3D
67—University of Cambridge +1 otherMay 1, 2025brain_mridisease_progression_predictionfoundation_model+6A 3D brain MRI segmentation foundation model trained on 66,000+ brain image-label pairs across 14 MRI sub-modalities, paired with a hypergraph dynamic adapter for brain disease analysis.
Imaging26OpennessUniBiomed
619215Hong Kong University of Science and Technology +2 othersApril 30, 2025foundation_modelhistologymultimodal+6Universal foundation model that jointly generates diagnostic text and segments the corresponding targets across ten biomedical imaging modalities.
ImagingLanguage model64OpennessOmniEM
—2—Unified electron microscopy image analysis toolkit built on EM-DINO, a vision foundation model pretrained on 5 million diverse EM images.
Imaging4OpennessSwin-BOB
494—A 3D MRI organ segmentation foundation model based on Swin-UNETR, trained on the UKBOB dataset of 1.37 billion labeled masks across 72 anatomical structures.
Imaging64OpennessSAM-MedUS
27—A foundational model for universal ultrasound image segmentation that adapts the Segment Anything Model to handle eight anatomical regions in a single network.
Imaging14OpennessFetalCLIP
6615—Mohamed bin Zayed University of Artificial Intelligence +1 otherFebruary 20, 2025classificationcontrastive_learningfoundation_model+7A CLIP-based vision-language foundation model for fetal ultrasound, pretrained on 210,035 image-caption pairs for plane classification, biometry, anomaly detection, and segmentation.
Imaging13OpennessBPD
1——Fifth-place solution from the CZII CryoET Kaggle competition; an ensemble of four lightweight 3D U-Nets for protein particle localization in cryo-ET tomograms.
Imaging67OpennessCellpose 3
2.2K322—Generalist cell segmentation framework with a super-generalist cyto3 model and one-click image restoration networks optimized for downstream segmentation quality.
Imaging65OpennessTopCUP
2——First-place solution from the CZII CryoET Object Identification Kaggle competition; an ensemble of 3D EfficientNet-encoder U-Nets for multi-class protein particle picking.
Imaging96OpennessSeventh-place CZII CryoET Kaggle solution; an ensemble of three heatmap-predicting 3D segmentation models using ResNet50d and EfficientNetV2-M backbones for particle picking.
Imaging95OpennessEighth-place CZII CryoET Kaggle solution; a weighted model soup of tiny, medium, and large 3D U-Nets pretrained on simulated data and fine-tuned on experimental cryo-ET tomograms.
Imaging86OpennessMedicoSAM
316—A Segment Anything Model (SAM) variant finetuned on diverse medical images, delivering a reusable promptable checkpoint for interactive and automatic medical image segmentation.
Imaging77Openness