All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 124 of 70 filtered models

  • Emap2lig

    1
    Kihara Lab +1 otherJune 4, 2026atomic_modelingcryo_emdiffusion+6

    A two-stage deep learning framework that detects ligand densities in cryo-EM maps and reconstructs their atomic structures with a diffusion generative model.

    ImagingSmall molecule
    25Openness
  • University of CopenhagenMay 14, 2026foundation_modelplant_phenotypingsegmentation+3

    A domain-specific foundation model for zero-shot plant root image segmentation, built on a MobileSAM backbone and trained across nine diverse root datasets.

    Imaging
    74Openness
  • BrainDINO

    3
    Emory University +2 othersApril 30, 2026brain_age_estimationdisease_classificationfoundation_model+6

    A self-supervised DINOv3-based foundation model for brain MRI, pretrained on ~6.6M unlabeled axial slices and transferable to diverse neuroimaging tasks.

    Imaging
    49Openness
  • mnDINO

    Morgridge Institute for ResearchMarch 12, 2026cell_biologyfluorescence_microscopyfoundation_model+4

    A DINO-pretrained vision transformer for accurate, robust segmentation of micronuclei in DNA-stained fluorescence microscopy across cell lines and instruments.

    Imaging
    32Openness
  • Merlin

    41912712.5K
    Stanford UniversityJanuary 1, 2026cnncontrastive_learningct+8

    A 3D vision-language foundation model for abdominal CT that pretrains on paired scans, radiology reports, and structured EHR codes for zero-shot interpretation.

    ImagingLanguage model
    54Openness
  • Harvard Medical SchoolDecember 31, 2025cell_biologycell_trackingfoundation_model+6

    A native 3D vision transformer self-supervised on unlabeled fluorescence microscopy volumes that generalizes to unseen object classes without retraining or voxel annotations.

    Imaging
    8Openness
  • PLUTO-4

    2
    PathAINovember 4, 2025digital_pathologyfoundation_modelhistology+6

    Frontier-scale digital pathology foundation models from PathAI, spanning a compact 22M-parameter variant and a 1.1B-parameter flagship trained on 551K whole-slide images.

    Pathology
    19Openness
  • MIMO

    1223
    Peking University +1 otherOctober 11, 2025histologyinstruction_tuningmultimodal+6

    A medical vision-language model that accepts visual-referring multimodal input and produces pixel-grounded multimodal output, jointly answering and segmenting medical images.

    ImagingLanguage model
    11Openness
  • BrainFM

    176
    Johns Hopkins University +4 othersAugust 30, 2025foundation_modelimage_synthesismulti_task+4

    A modality-agnostic, multi-task foundation model for human brain imaging that runs five core tasks across uncalibrated CT and MRI without retraining.

    Imaging
    75Openness
  • University of Rijeka +1 otherJuly 1, 2025cnnfoundation_modelimage_classification+4

    A family of CNN foundation models pretrained on ~1.9M multimodal radiology images for transfer learning across medical imaging tasks.

    Imaging
    53Openness
  • QoQ-Med

    5232391
    MITMay 31, 2025ecgfoundation_modelhistology+7

    Open multimodal clinical foundation model that jointly reasons over medical images, ECG time-series, and text reports, trained with domain-aware reinforcement learning.

    ImagingBiosignalsLanguage model
    74Openness
  • Cellpose-SAM

    2.2K152
    HHMI Janelia Research CampusMay 1, 2025cell_biologyfoundation_modelgeneralist_model+4

    Generalist cell segmentation model combining SAM's ViT-L backbone with Cellpose flow fields. First model to surpass average human annotators on the Cellpose benchmark.

    Imaging
    50Openness
  • University of Cambridge +1 otherMay 1, 2025brain_mridisease_progression_predictionfoundation_model+6

    A 3D brain MRI segmentation foundation model trained on 66,000+ brain image-label pairs across 14 MRI sub-modalities, paired with a hypergraph dynamic adapter for brain disease analysis.

    Imaging
    26Openness
  • UniBiomed

    619215
    Hong Kong University of Science and Technology +2 othersApril 30, 2025foundation_modelhistologymultimodal+6

    Universal foundation model that jointly generates diagnostic text and segments the corresponding targets across ten biomedical imaging modalities.

    ImagingLanguage model
    64Openness
  • OmniEM

    2
    Peking UniversityApril 19, 2025electron_microscopyfoundation_modelsegmentation+2

    Unified electron microscopy image analysis toolkit built on EM-DINO, a vision foundation model pretrained on 5 million diverse EM images.

    Imaging
    4Openness
  • Swin-BOB

    494
    University of OxfordApril 9, 2025anatomyfoundation_modelmri+5

    A 3D MRI organ segmentation foundation model based on Swin-UNETR, trained on the UKBOB dataset of 1.37 billion labeled masks across 72 anatomical structures.

    Imaging
    64Openness
  • Hunan Normal University +1 otherFebruary 27, 2025cnnfoundation_modelimage_segmentation+4

    A foundational model for universal ultrasound image segmentation that adapts the Segment Anything Model to handle eight anatomical regions in a single network.

    Imaging
    14Openness
  • FetalCLIP

    6615
    Mohamed bin Zayed University of Artificial Intelligence +1 otherFebruary 20, 2025classificationcontrastive_learningfoundation_model+7

    A CLIP-based vision-language foundation model for fetal ultrasound, pretrained on 210,035 image-caption pairs for plane classification, biometry, anomaly detection, and segmentation.

    Imaging
    13Openness
  • BPD

    1
    Chan Zuckerberg InitiativeFebruary 1, 2025cnncryo_etparticle_picking+3

    Fifth-place solution from the CZII CryoET Kaggle competition; an ensemble of four lightweight 3D U-Nets for protein particle localization in cryo-ET tomograms.

    Imaging
    67Openness
  • Cellpose 3

    2.2K322
    HHMI Janelia Research CampusFebruary 1, 2025cell_biologygeneralist_modelimage_restoration+2

    Generalist cell segmentation framework with a super-generalist cyto3 model and one-click image restoration networks optimized for downstream segmentation quality.

    Imaging
    65Openness
  • TopCUP

    2
    Chan Zuckerberg InitiativeFebruary 1, 2025cnncryo_etparticle_picking+3

    First-place solution from the CZII CryoET Object Identification Kaggle competition; an ensemble of 3D EfficientNet-encoder U-Nets for multi-class protein particle picking.

    Imaging
    96Openness
  • Chan Zuckerberg InitiativeFebruary 1, 2025cnncryo_etparticle_picking+3

    Seventh-place CZII CryoET Kaggle solution; an ensemble of three heatmap-predicting 3D segmentation models using ResNet50d and EfficientNetV2-M backbones for particle picking.

    Imaging
    95Openness
  • Chan Zuckerberg InitiativeFebruary 1, 2025cnncryo_etparticle_picking+3

    Eighth-place CZII CryoET Kaggle solution; a weighted model soup of tiny, medium, and large 3D U-Nets pretrained on simulated data and fine-tuned on experimental cryo-ET tomograms.

    Imaging
    86Openness
  • MedicoSAM

    316
    Computational Cell AnalyticsJanuary 20, 2025foundation_modelinteractive_annotationmedical_imaging+4

    A Segment Anything Model (SAM) variant finetuned on diverse medical images, delivering a reusable promptable checkpoint for interactive and automatic medical image segmentation.

    Imaging
    77Openness