Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 361–384 of 2565 models
RNA foundation model for m6A epitranscriptomics, pretrained on MeRIP-seq peak sequences to call base-resolution sites, regulator binding, and decay.
Histopathology model predicting 102 methylation-defined CNS tumor subtypes from H&E whole-slide images, with calibrated per-case confidence scores.
Multi-task antibody developability model predicting 18 biophysical endpoints from heavy- and light-chain sequence, trained on Lilly assay data.
Small-molecule ADME/Tox prediction from a SMILES string, covering 33 correlated ADMET endpoints in one multi-task model with conformal uncertainty.
Post-translational modification prediction for 12 PTM types in a single model, stratifying imbalanced training data with contrastive learning.
Generative protein-dynamics model that predicts short molecular dynamics trajectories with rectified flow matching over residue frames and torsions.
Reasoning LLM that predicts antimicrobial susceptibility of clinical bacterial isolates and supplies mechanistic explanations for each prediction.
Gene regulation model that conditions a pretrained DNA sequence embedding on CpG methylation to capture cell-type and allele-specific regulation.
Fine-tuned Enformer derivative that annotates cis-regulatory elements from DNA sequence, emitting enhancer, promoter, and insulator class labels.
Multi-sequence spine MRI foundation model with DINOv3 encoders, supporting condition classification, pathology localization, and report generation.
Uncertainty-aware diffusion model that enhances cryo-EM density maps while estimating voxel-wise confidence via Monte Carlo sampling.
Medical vision-language model for MR, CT and radiography, pretrained by curriculum learning on 12 million image-text pairs for zero-shot diagnosis.
Pathology vision foundation model adapting DINOv3 self-supervised learning to whole-slide histopathology across many magnifications and scales.
Variational autoencoder trained on scRNA-seq and applied frozen to impute unmeasured genes and denoise spatial transcriptomics profiles.
Specificity foundation model predicting small-molecule drug-target binding from sequence, scored as cross-modal retrieval without docking or assays.
Enzyme-substrate specificity model that scores catalytic pairs from sequence with a physics-derived dual-encoder and a contrastive objective.
Diffusion-based backbone generation and sequence design method for programmable asymmetric transmembrane beta-barrel nanopores.
Cryo-EM ligand modeling pipeline that detects bound ligand densities in a map, then reconstructs their atomic structures with a diffusion model.
CRISPR off-target prediction model that scores gRNA-DNA specificity from sequence, framing guide-target recognition as cross-modal retrieval.
Transformer that predicts protein-protein interactions at residue resolution, spanning mutations, PTMs, peptide-MHC binding, and disease variants.
Generative foundation model for antibody and multispecific design, doubling its predecessor's experimental success rate on therapeutic targets.
Peptide-MHC binding specificity model that frames presentation as cross-modal retrieval, aligning peptide and MHC encoders by contrastive learning.
Foundation model that predicts microRNA-mRNA target specificity from sequence, using a dual-encoder trained with a symmetric contrastive objective.