Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 73–96 of 250 filtered models
Hierarchical language model for atlas-level cell-type annotation of scATAC-seq data that annotates new query datasets without retraining.
Generative single-cell foundation model trained on 100M+ transcriptomes that predicts how genetic perturbations reshape cell trajectories over time.
Temporal diffusion framework for single-cell developmental dynamics, interpolating and forecasting cell states from irregularly sampled time series.
Knowledge-graph-grounded model that predicts single-cell transcriptomic responses to small molecules, with zero-shot prediction for unprofiled drugs.
Knowledge-graph foundation model for drug repurposing, grounding a biomedical graph in cell-type-specific genetic associations to rank indications.
Diffusion model predicting single-cell responses to genetic or drug perturbations, generating over distributions to capture population variability.
Single-cell foundation model applying discrete diffusion directly to scRNA-seq counts, generating unconditional and perturbation-conditioned profiles.
Multimodal single-cell foundation model whose multiway Transformer jointly models scRNA-seq and scATAC-seq from RNA-only, ATAC-only, or paired inputs.
Single-cell foundation model that forecasts how cancer cells evolve, autoregressively generating future gene expression from prior cell states.
Pan-cancer pretrained diffusion model imputing genome-wide expression from sparse spatial transcriptomics panels, zero-shot and reference-free.
Cross-species multimodal foundation model of immunology and inflammation, harmonizing transcriptomics and histology into patient-level embeddings.
Single-cell perturbation prediction model using conditional flow matching to map control cells to perturbed expression distributions.
Single-cell foundation model running self-attention across all 27,874 human genes, with Gene Ontology priors injected through a graph network.
Multimodal model that designs small molecules from transcriptomic and cell-imaging perturbation phenotypes with a rectified flow transformer.
Single-cell foundation model built on masked discrete diffusion, jointly generating gene identities and expression values from 59 million cells.
Spatial transcriptomics foundation model built on a lightweight graph convolutional network and trained by masked central-spot prediction.
Single-cell RNA-seq language model that treats cells as gene-expression tokens, synthesizing whole transcriptomes from tissue and disease metadata.
Cross-modal single-cell foundation model that aligns gene-expression profiles with LLM-enriched cell descriptions in a shared embedding space.
Single-cell foundation model using tabular attention over context cells to predict responses to arbitrary perturbations without fine-tuning.
Generative language model for phenotype-driven drug discovery, proposing small-molecule structures from up- and down-regulated gene signatures.
Transcriptomic foundation model pretrained on 67M single-cell and spatial profiles, modeling gene expression and inter-cellular dependencies.
Mixture-of-Experts generative model turning DNA sequence plus cell-type ATAC-seq into unified epigenomic, transcriptomic, and 3D chromatin profiles.