All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 145168 of 168 filtered models

  • RadFM

    561263
    Shanghai Jiao Tong University +1 otherAugust 4, 2023disease_diagnosisfoundation_modelgenerative+7

    Radiology foundation model that reads interleaved 2D and 3D scans with text for diagnosis, visual question answering, and report generation.

    ImagingLanguage model
    84Openness
  • Med-PaLM M

    552
    Google Research +1 otherJuly 26, 2023generativegenomicshistology+9

    Google's generalist multimodal biomedical AI that encodes clinical text, medical images, and genomics with a single set of weights across 14 tasks.

    ImagingLanguage model
    25Openness
  • MoTT

    137
    Carnegie Mellon UniversityJuly 22, 2023cell_biologyimage_analysisrepresentation_learning+2

    Transformer-based single particle tracker for fluorescence microscopy, using multi-hypothesis attention to link particles at low SNR and high density.

    Imaging
    20Openness
  • National University of SingaporeJuly 3, 2023cell_biologygraph_neural_networkimage_analysis+2

    Tokenized graph transformer that embeds longitudinal brain functional connectomes from fMRI for interpretable neurodegenerative disease diagnosis.

    Imaging
    26Openness
  • Endo-FM

    230135
    Chinese University of Hong Kong +1 otherJune 29, 2023detectionendoscopyfoundation_model+5

    Endoscopy video foundation model that learns spatial-temporal representations from unlabeled clips for classification, segmentation, and detection.

    Imaging
    77Openness
  • MIS-FM

    25050
    University of Electronic Science and Technology of China +3 othersJune 29, 2023cnnctfoundation_model+3

    Self-supervised foundation model for 3D medical image segmentation, pretrained on roughly 110,000 unannotated CT volumes via Volume Fusion.

    Imaging
    73Openness
  • MedLSAM

    52282
    Shanghai AI Laboratory +3 othersJune 26, 2023cnnctfew_shot+6

    3D CT localization foundation model that pairs MedLAM with SAM to segment any anatomical structure at a fixed, dataset-independent annotation cost.

    Imaging
    76Openness
  • LVM-Med

    217100
    University of Stuttgart +6 othersJune 20, 2023classificationcontrastive_learningct+11

    Self-supervised vision foundation model pretrained on 1.3M medical images via second-order graph matching, for segmentation and classification.

    Imaging
    28Openness
  • CellViT

    39131
    Institute for AI in MedicineJune 14, 2023foundation_modelhistologysegmentation+2

    Vision Transformer for cell instance segmentation and classification in H&E whole-slide images, extended by CellViT++ with foundation backbones.

    Imaging
    21Openness
  • MedBLIP

    5789
    Shanghai Jiao Tong UniversityMay 18, 2023brain_mricomputer_aided_diagnosisimage_classification+7

    Vision-language framework for 3D medical image diagnosis and visual question answering, bridging frozen image encoders and LLMs, shown on brain MRI.

    ImagingLanguage model
    35Openness
  • STU-Net

    372159
    Shanghai AI LaboratoryApril 13, 2023cnnctfoundation_model+5

    Scalable and transferable U-Net family (14M–1.4B parameters) for 3D medical image segmentation, supervised-pretrained on TotalSegmentator.

    Imaging
    82Openness
  • UniverSeg

    588185
    MIT CSAIL +3 othersApril 12, 2023cnnfew_shot_learningfoundation_model+4

    Medical image segmentation model that solves unseen segmentation tasks in context from a few labeled examples, with no retraining or fine-tuning.

    Imaging
    49Openness
  • PMC-CLIP

    241
    Shanghai Jiao Tong UniversityMarch 13, 2023cnncontrastive_learninghistology+7

    Biomedical vision-language model trained contrastively on 1.6M figure-caption pairs mined from PubMed Central open-access articles.

    PathologyImaging
    63Openness
  • BiomedCLIP

    128665878.5K
    Microsoft ResearchMarch 1, 2023contrastive_learningfoundation_modelimage_analysis+4

    Biomedical vision-language model trained contrastively on 15M PubMed Central figure-caption pairs for zero-shot classification, retrieval, and VQA.

    Imaging
    61Openness
  • Southeast University +2 othersMarch 1, 2023convolutional_neural_networkctimage_registration+7

    Self-supervised pretraining for 3D medical images that learns anatomical correspondences between scans, giving encoders transferable to segmentation.

    Imaging
    17Openness
  • PCRLv2

    10083
    The University of Hong Kong +1 otherJanuary 2, 2023chest_x_rayclassificationcnn+8

    Self-supervised pretraining framework for medical imaging that unifies pixel restoration with contrastive learning across 2D and 3D image backbones.

    Imaging
    71Openness
  • RoentGen

    88146
    Stanford UniversityNovember 23, 2022chest_radiographydata_augmentationfoundation_model+5

    Text-conditioned latent diffusion model that generates synthetic chest X-rays from free-form radiology prompts by adapting Stable Diffusion.

    ImagingLanguage model
    20Openness
  • Cellpose 2.0

    2.3K1.1K
    HHMI Janelia Research CampusOctober 3, 2022active_learningcell_biologyfluorescence_microscopy+3

    Human-in-the-loop cell segmentation framework enabling custom model training from as few as 100-200 corrected annotations.

    Imaging
    59Openness
  • Shenzhen Research Institute of Big Data +2 othersSeptember 15, 2022chest_x_rayfoundation_modelimage_text_retrieval+7

    Medical vision-language pretraining framework that injects structured medical knowledge into radiology image-text learning for VQA and retrieval.

    ImagingLanguage model
    29Openness
  • CheXzero

    234527
    Stanford UniversitySeptember 15, 2022chest_radiographycontrastive_learningimage_classification+7

    Self-supervised vision-language model for zero-shot detection of chest X-ray pathologies, trained on image-report pairs without explicit labels.

    ImagingPathology
    70Openness
  • Cellpose

    2.3K3.6K
    HHMI Janelia Research CampusDecember 7, 2020brightfieldcell_biologyfluorescence_microscopy+2

    Generalist deep learning algorithm for cell and nucleus instance segmentation using simulated diffusion flows, without per-dataset retraining.

    Imaging
    92Openness
  • Arizona State University +1 otherAugust 19, 2019classificationcnnct+7

    Self-supervised 3D pretrained models for CT and MRI that learn anatomical representations from unlabeled volumes and transfer to segmentation tasks.

    Imaging
    20Openness
  • Med3D

    2.2K681
    TencentAILabHealthcareApril 1, 20193d_resnetcnnct+8

    Pretrained 3D-ResNet backbones for volumetric medical image analysis, co-trained across eight CT and MRI segmentation datasets for transfer learning.

    Imaging
    75Openness
  • pytorch_fnet

    162493
    Allen Institute for Cell ScienceSeptember 17, 2018cell_biologycnnimage_restoration+3

    3D convolutional network that predicts subcellular fluorescence labels from transmitted-light microscopy, enabling label-free imaging of living cells.

    Imaging
    26Openness