All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 124 of 168 filtered models

  • HASSL

    2
    TUM.ai +3 othersJuly 5, 2026cell_biologycontrastive_learningfoundation_model+4

    Hierarchy-aware self-supervised model for single-cell microscopy that preserves morphological structure suppressed by imaging-modality confounders.

    ImagingSingle-cell
    37Openness
  • University of California, San DiegoJuly 1, 2026brain_mridisease_classificationfoundation_model+1

    Brain MRI morphometry model that estimates cortical thickness, surface area, and volume in milliseconds instead of hours.

    Imaging
    47Openness
  • CryoACE

    ShanghaiTech UniversityJune 30, 2026cryo_emdiffusionfoundation_model+2

    Atomic protein model building from cryo-EM density maps, resolving conformational heterogeneity through atom-centric sampling and diffusion.

    ProteinImaging
    38Openness
  • V3Cell

    Xinjiang Technical Institute of Physics and Chemistry +2 othersJune 24, 2026cell_biologydrug_discoverygenerative+4

    Vision-guided model that builds virtual 3D organoid surrogates from brightfield microscopy to predict chemical perturbation responses without omics.

    ImagingPathology
    4Openness
  • Helmholtz MunichJune 22, 2026cell_biologycontrastive_learningfluorescence_microscopy+6

    Self-supervised 3D masked autoencoder for volumetric fluorescence microscopy, aligned to ESM2 embeddings to predict protein localization.

    ImagingSingle-cell
    71Openness
  • SpineAgent

    6
    University of WashingtonJune 7, 2026contrastive_learningfoundation_modelimage_classification+8

    Multi-sequence spine MRI foundation model with DINOv3 encoders, supporting condition classification, pathology localization, and report generation.

    Imaging
    55Openness
  • CryoDiff

    Shandong UniversityJune 6, 2026cryo_emdiffusiongenerative+2

    Uncertainty-aware diffusion model that enhances cryo-EM density maps while estimating voxel-wise confidence via Monte Carlo sampling.

    Imaging
    20Openness
  • Emap2lig

    2
    Kihara Lab +1 otherJune 4, 2026atomic_modelingcryo_emdiffusion+6

    Cryo-EM ligand modeling pipeline that detects bound ligand densities in a map, then reconstructs their atomic structures with a diffusion model.

    ImagingSmall molecule
    25Openness
  • CryoProt

    Hunan University +1 otherJune 1, 2026active_site_identificationbinding_affinitycryo_em+7

    Protein representation learning from cryo-EM density maps, transferring to flexibility, active-site, binding-affinity, and stability tasks.

    ImagingProtein
    11Openness
  • Vermeer

    3
    Microsoft Research +2 othersJune 1, 2026autoregressivecell_biologyfluorescence_microscopy+7

    Generative microscopy foundation model that synthesizes in-silico fluorescence images of protein subcellular localization from amino-acid sequence.

    ImagingProtein
    17Openness
  • PIGMENT

    Tsinghua UniversityMay 29, 2026diffusion_mrifoundation_modelgenerative+6

    Physics-informed generative foundation model for quantitative diffusion MRI that maps brain microstructure and adapts zero-shot to each participant.

    Imaging
    11Openness
  • University of CopenhagenMay 14, 2026foundation_modelsegmentationtransfer_learning+2

    Domain-specific foundation model for zero-shot plant root image segmentation, built on a MobileSAM backbone and trained across nine root datasets.

    Imaging
    74Openness
  • FiberLM

    NYU Grossman School of MedicineMay 11, 2026connectomicsdiffusion_mriself_supervised+3

    Transformer tractography model for mouse-brain diffusion MRI, guided by axonal priors learned from Allen Mouse Brain Connectivity Atlas streamlines.

    Imaging
    8Openness
  • Emory University +2 othersApril 30, 2026brain_age_estimationdisease_classificationfoundation_model+6

    Self-supervised brain MRI foundation model built on DINOv3, pretrained on roughly 6.6 million unlabeled axial slices for neuroimaging tasks.

    Imaging
    49Openness
  • Human Protein Atlas +1 otherMarch 31, 2026diffusionfoundation_modelgenerative+4

    Generative imaging model simulating single-cell fluorescence microscopy for all 12,800 human proteins in the Human Protein Atlas.

    Imaging
    51Openness
  • mnDINO

    Morgridge Institute for ResearchMarch 12, 2026cell_biologyfluorescence_microscopyfoundation_model+4

    Vision transformer trained with DINO self-supervision to segment micronuclei in DNA-stained fluorescence images across cell lines and microscopes.

    Imaging
    32Openness
  • MIT +1 otherMarch 11, 2026cell_type_annotationfoundation_modelgene_expression_prediction+7

    Cell-centric microscopy foundation model that distills morphology and microenvironment views into a unified embedding for virtual spatial omics.

    Spatial omicsImagingPathology
    15Openness
  • BioCLIP 2.5

    77435.3K
    Imageomics InstituteFebruary 10, 2026biodiversitycontrastive_learningfoundation_model+6

    Vision foundation model for the tree of life, scaling BioCLIP 2 to a ViT-H/14 backbone and more organism images for zero-shot species classification.

    Imaging
    93Openness
  • NeuroVLM

    8
    University of California, San DiegoFebruary 9, 2026autoencoderbrain_decodingcontrastive_learning+2

    Vision-language foundation model linking human brain activation maps and neuroscience text for text-to-brain and brain-to-text generation.

    ImagingLanguage model
    74Openness
  • EchoJEPA

    3294
    Bowang LabFebruary 2, 2026cardiac_ultrasoundechocardiographyejection_fraction_estimation+6

    Joint-embedding predictive foundation model for echocardiography, pretrained on 18M cardiac ultrasound videos for artifact-robust representations.

    Imaging
    62Openness
  • COSMIC

    EPFLJanuary 24, 2026autoencodercell_biologycell_type_annotation+7

    Bidirectional generative framework linking nuclear morphology and gene expression, built on a morphology model trained on 21 million segmented nuclei.

    ImagingSingle-cellSpatial omics
    4Openness
  • Universidad Carlos III de MadridJanuary 22, 2026cnncryo_emdenoising+5

    Bioimage restoration model pairing a NAFNet backbone with a perceptual GAN loss, best on LPIPS in 7 of 8 AI4Life microscopy benchmarks.

    Imaging
    16Openness
  • Merlin

    4531366.9K
    Stanford UniversityJanuary 1, 2026cnncontrastive_learningct+8

    3D vision-language foundation model for abdominal CT, pretrained on scans, radiology reports, and EHR codes for zero-shot interpretation.

    ImagingLanguage model
    54Openness
  • Harvard Medical SchoolDecember 31, 2025cell_biologyfoundation_modelmicroscopy+5

    Native 3D vision transformer self-supervised on unlabeled fluorescence microscopy volumes, segmenting subcellular structures without voxel labels.

    Imaging
    8Openness