All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 124 of 148 filtered models

  • CryoDiff

    Shandong UniversityJune 6, 2026cryo_emdiffusiongenerative+2

    Uncertainty-aware diffusion model that enhances cryo-EM density maps while estimating voxel-wise confidence via Monte Carlo sampling.

    Imaging
    20Openness
  • Emap2lig

    1
    Kihara Lab +1 otherJune 4, 2026atomic_modelingcryo_emdiffusion+6

    A two-stage deep learning framework that detects ligand densities in cryo-EM maps and reconstructs their atomic structures with a diffusion generative model.

    ImagingSmall molecule
    25Openness
  • CryoProt

    Hunan University +1 otherJune 1, 2026active_site_identificationbinding_affinitycryo_em+7

    Protein pretraining framework that learns representations directly from cryo-EM density maps, transferring to flexibility, active-site, binding-affinity, and stability tasks.

    ImagingProtein
    11Openness
  • Vermeer

    2
    Microsoft Research +2 othersJune 1, 2026autoregressivecell_biologyfluorescence_microscopy+7

    Channel-adaptive autoregressive generative model that synthesizes in-silico fluorescence microscopy of protein subcellular localization from amino-acid sequence and cellular landmark stains.

    ImagingProtein
    17Openness
  • PIGMENT

    Tsinghua UniversityMay 29, 2026diffusion_mrifoundation_modelgenerative+6

    A physics-informed generative foundation model for quantitative diffusion MRI that maps brain microstructure (tensor, kurtosis, NODDI) and adapts zero-shot to each participant's data.

    Imaging
    11Openness
  • University of CopenhagenMay 14, 2026foundation_modelplant_phenotypingsegmentation+3

    A domain-specific foundation model for zero-shot plant root image segmentation, built on a MobileSAM backbone and trained across nine diverse root datasets.

    Imaging
    74Openness
  • FiberLM

    NYU Grossman School of MedicineMay 11, 2026connectomicsdiffusion_mriself_supervised+3

    A Transformer-based streamline propagation model for mouse-brain diffusion-MRI tractography, trained on Allen Mouse Brain Connectivity Atlas streamlines guided by viral tracer data.

    Imaging
    8Openness
  • BrainDINO

    3
    Emory University +2 othersApril 30, 2026brain_age_estimationdisease_classificationfoundation_model+6

    A self-supervised DINOv3-based foundation model for brain MRI, pretrained on ~6.6M unlabeled axial slices and transferable to diverse neuroimaging tasks.

    Imaging
    49Openness
  • ProtiCelli

    20
    Human Protein Atlas +1 otherMarch 31, 2026celldiffusiondrug_perturbation_simulation+8

    Deep generative model simulating fluorescence microscopy images for all 12,800 human proteins across three landmark stains, providing proteome-wide virtual cell imaging at single-cell resolution.

    Imaging
    51Openness
  • mnDINO

    Morgridge Institute for ResearchMarch 12, 2026cell_biologyfluorescence_microscopyfoundation_model+4

    A DINO-pretrained vision transformer for accurate, robust segmentation of micronuclei in DNA-stained fluorescence microscopy across cell lines and instruments.

    Imaging
    32Openness
  • MIT +1 otherMarch 11, 2026cell_type_annotationfoundation_modelgene_expression_prediction+7

    A self-supervised, cell-centric pretraining strategy that distills morphology and microenvironment views of each cell into a unified embedding for virtual spatial omics from microscopy.

    Spatial omicsImagingPathology
    15Openness
  • EchoJEPA

    3133
    Bowang LabFebruary 2, 2026cardiac_ultrasoundechocardiographyejection_fraction_estimation+6

    A Joint-Embedding Predictive foundation model for echocardiography, pretrained on 18M cardiac ultrasound videos to learn artifact-robust anatomical representations.

    Imaging
    62Openness
  • COSMIC

    EPFLJanuary 24, 2026autoencodercell_biologycell_type_annotation+7

    Bidirectional generative framework linking single-cell nuclear morphology and gene expression, built on a morphology foundation model trained on 21M+ segmented nuclei.

    ImagingSingle-cellSpatial omics
    4Openness
  • Universidad Carlos III de MadridJanuary 22, 2026cnncryo_emdenoising+5

    A NAFNet backbone trained with a perceptual GAN objective for high-fidelity bioimage restoration, achieving best LPIPS on 7 of 8 AI4Life benchmarks.

    Imaging
    16Openness
  • Merlin

    41912712.5K
    Stanford UniversityJanuary 1, 2026cnncontrastive_learningct+8

    A 3D vision-language foundation model for abdominal CT that pretrains on paired scans, radiology reports, and structured EHR codes for zero-shot interpretation.

    ImagingLanguage model
    54Openness
  • Harvard Medical SchoolDecember 31, 2025cell_biologycell_trackingfoundation_model+6

    A native 3D vision transformer self-supervised on unlabeled fluorescence microscopy volumes that generalizes to unseen object classes without retraining or voxel annotations.

    Imaging
    8Openness
  • MAGNET

    Huazhong University of Science and TechnologyDecember 25, 2025denoisingfluorescence_microscopyfoundation_model+7

    An all-in-one foundation model for microscopic image restoration, unifying 8 tasks across 5 microscopy modalities and 2D/3D data, with zero-shot inference on unseen imaging systems.

    Imaging
    7Openness
  • Micellangelo

    Eindhoven University of TechnologyNovember 24, 2025cell_biologycell_morphology_simulationconditional_generation+5

    Flow-matching generative model that simulates high-resolution fluorescence images of human fibroblasts conditioned on surface micro-topographies, a digital twin of cell-material interactions.

    Imaging
    5Openness
  • NeuroVFM

    204
    University of Michigan +1 otherNovember 23, 2025ctfoundation_modeljoint_embedding_predictive_architecture+8

    A generalist neuroimaging vision foundation model pretrained on 5.24M clinical MRI and CT volumes for radiologic diagnosis and report generation.

    Imaging
    57Openness
  • MIMO

    1223
    Peking University +1 otherOctober 11, 2025histologyinstruction_tuningmultimodal+6

    A medical vision-language model that accepts visual-referring multimodal input and produces pixel-grounded multimodal output, jointly answering and segmenting medical images.

    ImagingLanguage model
    11Openness
  • Shanghai Jiao Tong UniversityOctober 1, 2025brain_age_predictionbrain_mridensenet+8

    A self-supervised foundation model for structural brain MRI combining DenseNet and Vision Transformer with Mixture of Experts for multi-task brain disease diagnosis and brain age prediction.

    Imaging
    8Openness
  • NeuroRAD-FM

    Stony Brook University +1 otherSeptember 18, 2025cnnfoundation_modelmolecular_subtyping+6

    A neuro-oncology foundation model for brain tumor MRI that uses distributionally robust self-supervised pretraining to predict molecular markers and survival across institutions.

    Imaging
    23Openness
  • McGill University +1 otherSeptember 12, 2025brain_mricnncontrastive_learning+7

    A SimCLR self-supervised foundation model for 3D brain MRI, pretrained on 18,759 patients across 11 neurological-disease datasets for diverse diagnostic tasks.

    Imaging
    74Openness
  • EMReady2

    12
    Huazhong University of Science and TechnologySeptember 3, 2025cryo_emcryo_etimage_restoration+4

    A Mamba-based dual-branch UNet that enhances cryo-EM and cryo-ET density maps using local resolution-guided learning to improve interpretability.

    Imaging
    54Openness