Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 1129–1152 of 2336 models
Latent diffusion model for H&E-to-IHC stain transfer, dual-conditioned on pathology foundation-model embeddings, covering HER2, Ki67, ER, and PR.
Unified atomic diffusion model for protein structure prediction and de novo antibody design, steered by epitope and target-structure constraints.
Pocket-conditioned 3D diffusion model for scaffold decoration, guided by evolutionary residue conservation and a protein-ligand interaction prior.
EEG foundation model that separates channel-wise from temporal attention, pretrained on 25,000 hours of recordings spanning eight task paradigms.
Pathology video-language model that reads histopathology clips and produces a step-by-step histological description plus a sign-out diagnosis.
Retrosynthesis and reaction prediction LLM that jointly learns molecular fragmentation and recombination from a 4.4M-instruction chemistry corpus.
Sparse-view CBCT reconstruction foundation model pretrained on 8,407 CT volumes, recovering full 3D anatomy from as few as six X-ray projections.
Protein model accuracy estimation for single chains and complexes, predicting per-residue lDDT, interface QS-score, and overall fold TM-score.
Zero-shot tumor segmentation on CT and MRI that reads text-prompted anomaly attention maps out of a frozen medical foundation diffusion model.
Anticancer protein prediction from sequence with a fine-tuned ESM-2 650M classifier; a BLAST hybrid raises validation AUC to 0.91.
Generative diffusion model that samples biomolecular conformational ensembles for proteins, RNA, and ligands in hours instead of millisecond-scale MD.
Physics-guided all-atom diffusion model for protein-ligand complex prediction, reaching 95.3% success on PoseBusters redocking with a known pocket.
Brain MRI segmentation foundation model trained on 66,000+ image-label pairs across 14 MRI sub-modalities, with a hypergraph dynamic adapter.
Generalist cell segmentation model pairing SAM's ViT-L encoder with Cellpose flow fields, outperforming average human annotators on its benchmark.
Genomic prediction model for plant and animal breeding, pretrained entirely on simulated populations and deployed with no training or tuning.
Peptide-MHC structure prediction by SE(3)-equivariant diffusion, sampling 10 Cα conformations in under 6 seconds at 0.45 Å best-of-10 RMSD.
Single-cell foundation model inferring cis-regulatory relationships from scRNA-seq and scATAC-seq, pretrained on an atlas of 1.3 million cells.
Universal foundation model that jointly generates diagnostic text and segments the corresponding targets across ten biomedical imaging modalities.
De novo protein design model using flow matching for binder, motif scaffolding, and symmetric generation, with wet-lab-validated binders.
Alignment-free biosynthetic gene cluster detection and annotation from ESM-2 gene embeddings in genomic context, up to 102x faster than antiSMASH.
Vision transformer that regresses Ki-67-positive and -negative nuclei counts in breast histopathology and scores the index from H&E slides alone.
Generative single-cell foundation model trained on 112 million cells from 12 species, autoregressively modeling gene identities and expression counts.
RNA secondary structure prediction that turns phylogenetic compensatory-substitution evidence into attention priors over frozen RiNALMo embeddings.