All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 937943 of 943 models

  • UniRep

    3661.1K
    Church LabJanuary 1, 2019embeddingsfoundation_model

    Protein language model using a multiplicative LSTM over 24 million UniRef50 sequences to produce fixed-length embeddings for protein engineering.

    Protein
    49Openness
  • pytorch_fnet

    162493
    Allen Institute for Cell ScienceSeptember 17, 2018cell_biologycnnimage_restoration+3

    3D convolutional network that predicts subcellular fluorescence labels from transmitted-light microscopy, enabling label-free imaging of living cells.

    Imaging
    26Openness
  • Parapred

    61153
    University of CambridgeSeptember 1, 2018antibodyparatope_prediction

    Antibody paratope prediction model that identifies antigen-contacting residues from heavy and light CDR sequences alone, using CNN and RNN layers.

    Protein
    88Openness
  • Basenji

    473513
    Calico Life SciencesMay 1, 2018chromatincnngene_expression+4

    Dilated convolutional network that predicts cell-type-specific epigenetic and transcriptional profiles from DNA sequence across mammalian genomes.

    DNA & Gene
    73Openness
  • DCell

    125391
    Ideker LabJanuary 1, 2018interpretablesystems_biology

    Visible neural network simulating eukaryotic cell growth by embedding the Gene Ontology into its architecture for interpretable phenotype prediction.

    Single-cell
    41Openness
  • University of VirginiaDecember 4, 2017chromatindeep_learningepigenomic_prediction+3

    Attention-based model predicting gene expression from histone modification signals across 56 cell types, with interpretable attention scores.

    DNA & Gene
    80Openness
  • Basset

    268953
    Harvard UniversityJuly 1, 2016chromatincnngenomics+3

    Convolutional neural network that predicts DNA accessibility from sequence across 164 DNase-seq cell types, enabling variant effect prediction.

    DNA & Gene
    80Openness